Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3727 ATGGATGAGATGATGAAAATGGAGTACTACAGGCTATCAGAGAAAGAGAGTGGATCttcagcagcagcagcaacaaTTGTTGAAGAAGAGATGGGAATTATAAGGAAAGGTGCATGGACAGAGGAAGAGGATGCTATTCTTGCCAACTACGTGAGTGTGCACGGTGAAGGGCATTGGAACTCCGTGGCTCGCTGTGCAGGTCTGAAGAGAAGTGGGAAAAGCTGCAGATTAAGATGGTTAAACTACCTGCGTCCAAACTTGAGGCATGGGAATATGAGTGTGGAAGAGCAGGTGTTAATTCTACATCTGCATTTGCGATGGGGCAATCGATGGTCGAAAATAGCGCAAGAGTTGCCGGGTAGAACGGACAATGAGATAAAGAATTACTGGAGGACTAGAGTGGTGAAGCAGGCCAAGCAACTCAACTGCCATGTCAATAGTAAACAGTTCAGAGACACCTTGCGTCTCCTCTGGATTCCCCGTTTGCTCGAGCGAATCCACCCTCAAACCTTAACGTTAACGCCCTCCTCTTCAATGTCACTTCACCAACCCTCTAATAATTCCCATTCATTATCATCCACTAATagtgcttctgcttctgctgaATTTGAAGCTGCCATTTGGACTGATGAAATCATGGATTCCGAATTTGAAGCTGCCATCTGGACTGATGAAAACATATGCTTCTTGCAACAACAGCTTACCCATATATGA 714 0.4258 MDEMMKMEYYRLSEKESGSSAAAATIVEEEMGIIRKGAWTEEEDAILANYVSVHGEGHWNSVARCAGLKRSGKSCRLRWLNYLRPNLRHGNMSVEEQVLILHLHLRWGNRWSKIAQELPGRTDNEIKNYWRTRVVKQAKQLNCHVNSKQFRDTLRLLWIPRLLERIHPQTLTLTPSSSMSLHQPSNNSHSLSSTNSASASAEFEAAIWTDEIMDSEFEAAIWTDENICFLQQQLTHI 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3727 237 PANTHER - 27 188 - -
Sto13g3727 237 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 27 188 IPR044676 GO:0003700|GO:0006355|GO:0043565
Sto13g3727 237 Gene3D - 36 88 - -
Sto13g3727 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 87 IPR017930 -
Sto13g3727 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 138 IPR017930 -
Sto13g3727 237 SUPERFAMILY Homeodomain-like 35 130 IPR009057 -
Sto13g3727 237 ProSiteProfiles Myb-like domain profile. 84 134 IPR001005 -
Sto13g3727 237 ProSiteProfiles Myb-like domain profile. 35 83 IPR001005 -
Sto13g3727 237 Pfam Myb-like DNA-binding domain 90 132 IPR001005 -
Sto13g3727 237 Pfam Myb-like DNA-binding domain 36 83 IPR001005 -
Sto13g3727 237 MobiDBLite consensus disorder prediction 174 195 - -
Sto13g3727 237 Gene3D - 92 154 - -
Sto13g3727 237 CDD SANT 38 83 IPR001005 -
Sto13g3727 237 CDD SANT 91 132 IPR001005 -
Sto13g3727 237 SMART sant 88 136 IPR001005 -
Sto13g3727 237 SMART sant 35 85 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3727 Sto-Chr13 39136341 39137158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3727 29 174 MYB Transcription Factor Family AT2G47190 68.493 2.41e-73 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto13g3727 Myb_DNA-binding 1.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3727 K09422 - gmx:778065 257.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0384 8 2436692 2437577 Sto13g3727 13 39136341 39137158 CCT
Sto13g3727 13 39136341 39137158 Sto13g3727 13 39136341 39137158 ECH