Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3718 ATGGAGAGGAAGGAGGAAGGAATTGGATGGTCTTCATTTGGTGGTTACAATAACTCAAACAGCTTTACTAGTGCACTAGTTTCGAGTACTAGTGGATTTGAGTTTGAGGAAATGGAAAAGAGGTCCTTAGGGTTTATGGAGTTACTGGAGGAGGAGCAGCACTATACTCCTGCTCTGCTTGATCTTGATCTATGTGCTAATAATTCTGCCACTGCAAAAGACTGTAGCGAGGCCTTGAATCAACAGCCTCCCACTCCTAACTCTTCATCCATTTCATCCGCCTCCAGTGAAGCACTCATTCATGATGACCACACCATCACTCCACAACCACACCCAAACACCAACAAACTgttgaaggtgaagaaGACAAAGCAAAAGAAACAAAGAGAACCCAGATTCGCCTTCATGACGAAAAGCGAGGTGGATCATCTGGAGGATGGGTACAGATGGAGAAAGTACGGTCAAAAAGCTGTGAAGAACAGCCCCTTCCCCAGTGCTTCATGTAATGTGAAGAAGCGAGTGGAACGATCGTATAGTGATCCAAGCATTGTAGTGACAACGTACGAAGGGCAACACACACATCCAAGCCCAATCATGCCTCGCTCAGTACTCCCTGCACCTTCTTCGCTTCCACCTGTTCCTCTTGTCACGTCACCCAACTATCTTCATCATCAACACTTGCTTCTTAACACATTCTCATCTTTCACTTTTCCATTTCCTCCCAACCATTCAACTTcaaacactaataataatatgacTGCTTTTCATGACACCACTCGACGGCCTTGCCATCCAGGGACCACTGCTTTTCTAAGCGACCATGGCCTTCTCCAGGATATTATTCCCTCTCATATGCTCAAACAAGAgtag 870 0.4391 MERKEEGIGWSSFGGYNNSNSFTSALVSSTSGFEFEEMEKRSLGFMELLEEEQHYTPALLDLDLCANNSATAKDCSEALNQQPPTPNSSSISSASSEALIHDDHTITPQPHPNTNKLLKVKKTKQKKQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPSASCNVKKRVERSYSDPSIVVTTYEGQHTHPSPIMPRSVLPAPSSLPPVPLVTSPNYLHHQHLLLNTFSSFTFPFPPNHSTSNTNNNMTAFHDTTRRPCHPGTTAFLSDHGLLQDIIPSHMLKQE 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3718 289 Gene3D WRKY domain 128 198 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sto13g3718 289 SUPERFAMILY WRKY DNA-binding domain 136 197 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sto13g3718 289 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 281 IPR044810 GO:0003700
Sto13g3718 289 MobiDBLite consensus disorder prediction 77 116 - -
Sto13g3718 289 SMART WRKY_cls 144 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sto13g3718 289 MobiDBLite consensus disorder prediction 77 129 - -
Sto13g3718 289 PANTHER WRKY TRANSCRIPTION FACTOR 1 281 - -
Sto13g3718 289 Pfam WRKY DNA -binding domain 145 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sto13g3718 289 ProSiteProfiles WRKY domain profile. 139 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3718 Sto-Chr13 39081245 39082635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3718 28 289 WRKY Transcription Factor Family AT2G47260 37.574 1.71e-51 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Sto13g3718 WRKY 5e-15 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0398 8 2508142 2509475 Sto13g3718 13 39081245 39082635 CCT
Sto13g3718 13 39081245 39082635 Sto13g3718 13 39081245 39082635 ECH