Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3690 ATGGGAGACGTGGTTCTGTTTGTTGATAATTTGAAATCCATTTCTGGAATTTCTCGCTGTAGAATCTGTCATGAAGAAGAATTTGAGAGCTCTAAAAGCTTCGAAGCTCCTTGTGCTTGTTCTGGCACCGTTAAGTTTGCTCACAGAGATTGCATACAGAGATGGTGCAATGAGAAAGGAAATACAACATGTGAAATATGTCTCCAGCAATATGAACCTGGATATACGGCACCTCCAAAGAAATTTCCAATAAATGATGAAACAATGACCATTCGAGATAGCCTGCAAATTtcaagaatggaggaagaaGCATTAAATGCAAGATTAGAGGCTATAGTTGAAAGAGTTGCGATAGAAAGGCATTACTCTGAATGCACGTCAGCCGCAGATAGAAGCGCATCTTACTGTCGATTACTGGCTTTGATTTTCACACTCCTCTTGCTTATAAGACATCTTTTCGCAGTGCTTACAAGTGGGCCGGAGAATTACCCATTTACACTTCTGACTGTTTTAATGCTAAGGGCTGGAGGAATTGTTATACCCatgttcataattattaggactATCGGAGCCCTCCAAAACATTATTCAGCGCAACTATCAGGATTCTGAAAATGATACATCATTGTCTGACGGATACGATGAAGAAAATGGGCCACTGCGTGATGTGATTTTTAGACACTCGTAG 687 0.3857 MGDVVLFVDNLKSISGISRCRICHEEEFESSKSFEAPCACSGTVKFAHRDCIQRWCNEKGNTTCEICLQQYEPGYTAPPKKFPINDETMTIRDSLQISRMEEEALNARLEAIVERVAIERHYSECTSAADRSASYCRLLALIFTLLLLIRHLFAVLTSGPENYPFTLLTVLMLRAGGIVIPMFIIIRTIGALQNIIQRNYQDSENDTSLSDGYDEENGPLRDVIFRHS 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3690 228 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Sto13g3690 228 SMART ringv_2 19 68 IPR011016 GO:0008270
Sto13g3690 228 SUPERFAMILY RING/U-box 19 72 - -
Sto13g3690 228 CDD RING_CH-C4HC3_MARCH 20 67 - -
Sto13g3690 228 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Sto13g3690 228 Pfam Protein of unknown function (DUF3675) 73 189 IPR022143 -
Sto13g3690 228 ProSiteProfiles Zinc finger RING-type profile. 20 67 IPR001841 -
Sto13g3690 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 77 IPR013083 -
Sto13g3690 228 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 225 IPR033275 -
Sto13g3690 228 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3690 Sto-Chr13 38915684 38918004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3690 20 67 C3H Transcription Factor Family AT2G37950 42.857 1.56e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3690 - - gmx:100797029 311.997
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0426 8 2657072 2659345 Sto13g3690 13 38915684 38918004 CCT
Sto13g3690 13 38915684 38918004 Sto13g3690 13 38915684 38918004 ECH