Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3682 ATGTTGGAAACCGGTTATCCATCGCAAGTGTTTCTCGGTATTCATTTCGTTCTCTTTGGTTTTGATCCTATCAGCGAAAGCAagGTCCGATTCAAGCTTGTAAATGGCGGTGGAGTTGATGTCGGACAGTACAGTCCAAGTTGCACGCATATCATTGTGGGAAAACTTGCATATGATGATCCTGTTTGCGTTGCTGCAAGAAATGATGGGAAGACGCTTGTCACTGCATTGTGGGTTGATCATAGTGCTGATATTGGAATGCCTGTTGATGTTACCTCAGTTATGTACAGGCCTCTAAAAGATTTAAAAGGTATACCAGGTGCCAAGAATTTGATTTTGTGCTTGACTGGTTATCAACGTCAGGATCGAGATGACATTATGACAATGGTTGGCCTGATGGGTGCACAATTTTCTAAGCCATTAGTGGCAAACAAGGTTACTCATCTTATATGCTACAAATTTGAAGGGGAGAAGTATGAGCTTGCTAAGAGACTGAAGACAATTAAGCTAGTTAATCACCGGTGGTTGGAAGACTGTTTGAAGTATTGGGTGCTTCTTCCTGAAGATAAATATAAGAAGAGTGGTTACGAACTAGAGCTGATGGTGGAAGAGGCTAAAGATtctgaagaagaaggtgaagatgTCATGTCAGGGAAATCTGGGGGAAGAAATATAATTAAGAGTCCCTTGAGTTCGAAAATTAGTACTGCTATAACCCACAGCTGCTCTAAACCCGTAAGAGAGGCATCAAATGCCATCCCAGATTCTACTGCTCCTGAGGGATTGCTCAAAGAGAATAAGGGTCATGACTCATTATATATTACTGGAAATGAGAACAGATCTGATCAAGCCTTAAGCTTTCGTCATGCTGATGATCTAAAAATAAGTTGTGGGGATCCTGGTGTTTCTAGGCATGATGCATCTGGTCAGCTAGCTGGAACTTGTGCTAAGATTGCCAAACCTAGGAATACTGATGTTCCAAAGGCAGTTGACTGCCCAGATCTTGGCATTCCTGAACATGCTAATTCATCAAGTCATATACCTGATCTGCAGGTTGGCACTTCTGAGTTTGGAAAGTTGGTTAATGACTTGAAATTAACTTCTGAAAGTGCTGAAAGACTTGCACAATCAGATGCAAAGGGTAGTTCTATGAATTACTCTAGGAAAAACTTAGAGAGATTTTCTCCTCCAAGGAATTTAAATGAGTGCTTGGGCAATCTAAGTGGCCCATCTGGGTTGCCTTTGGATGATATGAAATTTGGCAACAACCACCTTGAAACCTCCTCTTCTAGCAAGGTGGAAAAGTCAAGTGACAGAATCGGCTTCCCCTGTGTTGAAGGTTCTGGGAAAGGGAATGATTTTAATAGGAGAGAGCCAATTAGTTTATTACCTCAAAAGCGGACGAGTGAAGCTTCTTCTAATTCTAAATCAAAGGTGACTGCTAAAGCTAAATTGTCAAATGGAAGAGTCCCATCAGCAAATGGTACAATGCAAGGTTTGAAACAGACATCTCTGATGAATGAACCACCTGCAACTGAAGACCACTTTTCCGCTGGCATGGATGGTATAAGGAATGCGGAAATTGTGAACACAAAACCTTTGCAATGTGATAATGCCTCGGTTCAAACGCCTGTTCGGGGCAAACATGATTCTAAAATTAATGAGAATGATCAAGAATGTTATCCAAGGAAGAAGTCTCTGAATGAGGAATCAGCTGGTCTTACTACTCTAGATTTATGCAATGAAGCAGGCGATAAGTTTATTAGAAATTCACCCCGTAGAAAAACAGTTGCCAAGAAGTGTTTGGGTTCTAGACGTAAATTAGGTGCTACTGTTAAACAGAAGGGTTCAATTGCATTAAACAGAAGTGCCCCTCAAGGTGACACAGCAAGTTATTTCACTGGATGCAAAGAGACTTGTGATGATGAAAAGTTTCATACATCCTCTAAAATAGTTGACTTCGAGACATCATTGCAGCTGGAAAATGGTACTAAATCTGCAGAAAATGCCATTGGTGGAGAATTTCTAGATGATGAGACTGAGGCCCCAGATGACAAATTTGGTGGATACAATGGAATGGATCTTGATGAAAACAATGCTGAATTGGTTCATCTTTCAAAGAAAACAGATACACTGACAGAAGAGAAGGCGGAAGCAATTCACCATAGAGGAAAATGTGAAGAATCCGTGCCTCCAAAGGAAGGCACAAATGAAACTGAACAAGAGGCACATGAGCTGGTAGACTCAACTTCAAAAGTAAACGAAAAGCATAAAAGGAGAAAACTTCCTGCAGGTAGAATTAAGAAGACCACAGTTGCCAAAGATGTAAAGAGGTCTAAGGAGGCTGTGTGTGGCATAAAGAATGACAATGAGAGGAAAGATAAGGCAGAGATGGGAATGCTGGAAAAAGTGTCACTTCCTGTTGGTAAAAATGATGGCTCAGCTGTACCAACAAATAATTCGGAGAATTTTCTAGAAATGGAGAAAGAGAACAGACCAATTGATGGAGAGAAAGATAGTGAGGAGGTTATGAATGTTGGAAATTCAGTTATTAAAGCTAGTGTAGGTCTGGCAAAGATCAATGAAAAGGCTAAGAAGAAAATGGCTCTTAATTTATCTCCACCAGAAGATAACAAAAGAGCGAAAGGAGAAGCTGCATGTTTTATAGTAAGTGGGCATCGCCTACAGAGGAAAGAGTTTCAACAAATTATTAGACGTTTGAAAGGAAGAGTTTGCCGGGATTCTCATCAGTGGTCTTATCAAGCAACACACTCCATAGTCCCAGATCCTCTACGCAGGACGGAGAAATTTTTTGCTGCTGCCGCATCAGGAAGGTGGATTCTTAAAACTGATTACTTAACTGCCTGTAGCCAGGCAGGAAAATTCTTGGCAGAAGAGCCCTACGAGTGGCACAAGAGCGGCCTTAGTGAGGATGGTGCAATCAATATGGAGGCTCCAAGAAAATGGCGGCTGTTGAAAGAGAGGACAGGTCACGGTGCCTTATATGGAATGCGCATTATTATATATGGGGATTGCATTGCCCCACCTCTGGATACTCTGAAGCGTGTAGTCAAAGCAGGAGATGGAACTATATTAGCAACTTCTCCTCCCTATACTCGCTTCCTTGATACTGGAATTGACTATGCCATAGTTAGCCCGGGCATGCCACGTGTCGACTTGTGGGTCCAAGAGTTTTTAAAGCATGAGATACCCTGCGTTTTAGCTGACTACTTGGTGGAGTACGTTTGCAAGCCCGGGTTTTCCCTTGACAAACACGTTCTATACGGGACACATTCGTGGGCAGAGAAGTCATTTGCTAACCTTCAAAGTAGGGCGGAAGAGGTCATTGACAACCCTGCAGAAAATAGTGaggataatgataatgataatgatgcaGCTTGCCAAGTATGTGGATCCCGTGATAGAGGAGATGTAATGCTGCTCTGTGGTGATGAAAGTGGTTCCGTTGGTTGTGGTGTTGGCATGCATATCGATTGCTGCGACCCCCCTCTCAAAGAGGTTCCTGGGGAGGATTGGTTTTGTTCAAAATGCAGTAAAACCCGAAACTGCTCAAACTCTtccaagaaaaggaaaaaaagtgtCTTGTCTTCCTCGAGAATCAAGTGA 3627 0.4147 MLETGYPSQVFLGIHFVLFGFDPISESKVRFKLVNGGGVDVGQYSPSCTHIIVGKLAYDDPVCVAARNDGKTLVTALWVDHSADIGMPVDVTSVMYRPLKDLKGIPGAKNLILCLTGYQRQDRDDIMTMVGLMGAQFSKPLVANKVTHLICYKFEGEKYELAKRLKTIKLVNHRWLEDCLKYWVLLPEDKYKKSGYELELMVEEAKDSEEEGEDVMSGKSGGRNIIKSPLSSKISTAITHSCSKPVREASNAIPDSTAPEGLLKENKGHDSLYITGNENRSDQALSFRHADDLKISCGDPGVSRHDASGQLAGTCAKIAKPRNTDVPKAVDCPDLGIPEHANSSSHIPDLQVGTSEFGKLVNDLKLTSESAERLAQSDAKGSSMNYSRKNLERFSPPRNLNECLGNLSGPSGLPLDDMKFGNNHLETSSSSKVEKSSDRIGFPCVEGSGKGNDFNRREPISLLPQKRTSEASSNSKSKVTAKAKLSNGRVPSANGTMQGLKQTSLMNEPPATEDHFSAGMDGIRNAEIVNTKPLQCDNASVQTPVRGKHDSKINENDQECYPRKKSLNEESAGLTTLDLCNEAGDKFIRNSPRRKTVAKKCLGSRRKLGATVKQKGSIALNRSAPQGDTASYFTGCKETCDDEKFHTSSKIVDFETSLQLENGTKSAENAIGGEFLDDETEAPDDKFGGYNGMDLDENNAELVHLSKKTDTLTEEKAEAIHHRGKCEESVPPKEGTNETEQEAHELVDSTSKVNEKHKRRKLPAGRIKKTTVAKDVKRSKEAVCGIKNDNERKDKAEMGMLEKVSLPVGKNDGSAVPTNNSENFLEMEKENRPIDGEKDSEEVMNVGNSVIKASVGLAKINEKAKKKMALNLSPPEDNKRAKGEAACFIVSGHRLQRKEFQQIIRRLKGRVCRDSHQWSYQATHSIVPDPLRRTEKFFAAAASGRWILKTDYLTACSQAGKFLAEEPYEWHKSGLSEDGAINMEAPRKWRLLKERTGHGALYGMRIIIYGDCIAPPLDTLKRVVKAGDGTILATSPPYTRFLDTGIDYAIVSPGMPRVDLWVQEFLKHEIPCVLADYLVEYVCKPGFSLDKHVLYGTHSWAEKSFANLQSRAEEVIDNPAENSEDNDNDNDAACQVCGSRDRGDVMLLCGDESGSVGCGVGMHIDCCDPPLKEVPGEDWFCSKCSKTRNCSNSSKKRKKSVLSSSRIK 1208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3682 1208 Gene3D BRCT domain 881 996 IPR036420 -
Sto13g3682 1208 Gene3D BRCT domain 2 95 IPR036420 -
Sto13g3682 1208 MobiDBLite consensus disorder prediction 423 496 - -
Sto13g3682 1208 Gene3D BRCT domain 998 1095 IPR036420 -
Sto13g3682 1208 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Sto13g3682 1208 MobiDBLite consensus disorder prediction 465 496 - -
Sto13g3682 1208 SMART PHD_3 1133 1185 IPR001965 -
Sto13g3682 1208 Pfam twin BRCT domain 111 175 IPR001357 -
Sto13g3682 1208 SUPERFAMILY FYVE/PHD zinc finger 1122 1190 IPR011011 -
Sto13g3682 1208 CDD BRCT_PAXIP1_rpt3 16 87 - -
Sto13g3682 1208 SUPERFAMILY BRCT domain 7 93 IPR036420 -
Sto13g3682 1208 MobiDBLite consensus disorder prediction 1187 1208 - -
Sto13g3682 1208 ProSiteProfiles Zinc finger PHD-type profile. 1131 1187 IPR019787 -
Sto13g3682 1208 MobiDBLite consensus disorder prediction 723 761 - -
Sto13g3682 1208 CDD BRCT_TopBP1_rpt7 887 960 - -
Sto13g3682 1208 Pfam BRCA1 C Terminus (BRCT) domain 890 956 IPR001357 -
Sto13g3682 1208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1096 1201 IPR013083 -
Sto13g3682 1208 SUPERFAMILY BRCT domain 109 192 IPR036420 -
Sto13g3682 1208 Gene3D BRCT domain 99 220 IPR036420 -
Sto13g3682 1208 ProSiteProfiles BRCT domain profile. 888 970 IPR001357 -
Sto13g3682 1208 MobiDBLite consensus disorder prediction 723 755 - -
Sto13g3682 1208 SMART BRCT_7 99 183 IPR001357 -
Sto13g3682 1208 SMART BRCT_7 878 960 IPR001357 -
Sto13g3682 1208 SMART BRCT_7 998 1085 IPR001357 -
Sto13g3682 1208 SMART BRCT_7 8 86 IPR001357 -
Sto13g3682 1208 Pfam PHD-finger 1134 1186 IPR019787 -
Sto13g3682 1208 MobiDBLite consensus disorder prediction 1190 1208 - -
Sto13g3682 1208 SUPERFAMILY BRCT domain 888 973 IPR036420 -
Sto13g3682 1208 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 1 1184 IPR044254 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3682 Sto-Chr13 38871369 38877374 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3682 129 245 Core DNA Replication Machinery Family AT4G02110 62.393 1.02e-36 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sto13g3682 BRCT 1.9e-06 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3682 K10728 - gmx:100799144 1248.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3682 13 38871369 38877374 Sto13g3682 13 38871369 38877374 ECH