Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3677 ATGGAAGGACCGAGAGGGGAGGTAACGACGGTGGAAGAGCCACGAGTGCAGAATAGGGAAAGTGTGGACGTGGCGCAATCTGCGACCACAGAAGCATCTGCATCAGTAGCCCCCACCATTAAATCTCTTTCTCAGCTCCCTTCTATAAATTACCTTAACCTGTCTTTTACCTTTACGCCTATAGAAGATATGGGAAGAGCTCCTTGTTGTGAGAAAGTGGGGTTGAAGAAAGGAAGGTGGACTGCACAAGAGGATCAAATCTTGACCAACTACATTCGGGCCAATGGGGAAGGCTCTTGGAGATCATTGCCCAAGAATGCAGGGCTGCTAAGGTGCGGCAAGAGTTGCAGATTAAGATGGATTAACTATTTGAGAGATGATCTCAAACGAGGCAACATTTCTGCCCAAGAGGAACAGACCATCATTCAACTCCATGCTTCTTTAGGcaacagGTGGTCCATAATAGCGAGTGAGTTGCCAGGAAGAACAGACAACGAGataaaaaactactggaatTCTCATTTGAGTAGGAAGATCTACGGCTTGAGGCCACCGCCGCCAGCGGATAATAGTAATAGGAATACACATACACCGCCCAAGCGAAAAGGACGTGGTCGAACCAGCCCTAGTAGTGAAGATTTGTTGGAAGTTTTGGACATCATAATGGGTGATCACACGGTGGACACCACTACCCATTCTTGCTTACCGGAAGGAGCAAGTGGAGGTGATGGGGTTTTCAAAttaagtgaagaaagagaaagaaatgatgTGCAGGAGGAGtggtataataataattactggGAATGGGATAGTCATCAAAATGAGTGCTCATCATCAGATGAGTGGCACAAACAAAACCTCCTGTCTTGGCTGTGGGAAGATGATGATTTGGAAAGAGATTGTCACGTTACGGCGGAGCTTGATTCCCAGAAACTAGATGATATGCTTGCTTGGTTCCTTTCTTCTTGA 969 0.4386 MEGPRGEVTTVEEPRVQNRESVDVAQSATTEASASVAPTIKSLSQLPSINYLNLSFTFTPIEDMGRAPCCEKVGLKKGRWTAQEDQILTNYIRANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRDDLKRGNISAQEEQTIIQLHASLGNRWSIIASELPGRTDNEIKNYWNSHLSRKIYGLRPPPPADNSNRNTHTPPKRKGRGRTSPSSEDLLEVLDIIMGDHTVDTTTHSCLPEGASGGDGVFKLSEERERNDVQEEWYNNNYWEWDSHQNECSSSDEWHKQNLLSWLWEDDDLERDCHVTAELDSQKLDDMLAWFLSS 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3677 322 CDD SANT 134 175 IPR001005 -
Sto13g3677 322 MobiDBLite consensus disorder prediction 1 30 - -
Sto13g3677 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 125 179 IPR017930 -
Sto13g3677 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 124 IPR017930 -
Sto13g3677 322 CDD SANT 79 124 IPR001005 -
Sto13g3677 322 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 65 311 - -
Sto13g3677 322 ProSiteProfiles Myb-like domain profile. 125 175 IPR001005 -
Sto13g3677 322 MobiDBLite consensus disorder prediction 1 19 - -
Sto13g3677 322 SUPERFAMILY Homeodomain-like 74 171 IPR009057 -
Sto13g3677 322 SMART sant 76 126 IPR001005 -
Sto13g3677 322 SMART sant 129 177 IPR001005 -
Sto13g3677 322 Pfam Myb-like DNA-binding domain 77 124 IPR001005 -
Sto13g3677 322 Pfam Myb-like DNA-binding domain 130 175 IPR001005 -
Sto13g3677 322 Gene3D - 134 208 - -
Sto13g3677 322 ProSiteProfiles Myb-like domain profile. 72 124 IPR001005 -
Sto13g3677 322 MobiDBLite consensus disorder prediction 181 210 - -
Sto13g3677 322 Gene3D - 74 130 - -
Sto13g3677 322 PANTHER MYB TRANSCRIPTION FACTOR 65 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3677 Sto-Chr13 38849695 38852064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3677 64 182 MYB Transcription Factor Family AT5G49330 80.672 4.30e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto13g3677 Myb_DNA-binding 1.4e-11 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0437 8 2719350 2720850 Sto13g3677 13 38849695 38852064 CCT
Sto13g3677 13 38849695 38852064 Sto13g3677 13 38849695 38852064 ECH