Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3671 ATGAGTCCGGAGCGGCCCAGAACACTATACATGAGGTTGACAAGGGAGCTTTTCCCAGAACCAGAGAAACCCACCAAGAGAATAGTGATGAGTTGGGGAATGTCCATTTTGTCCTTGCTTATCCCTCCCGTAGGAAGCCAGAAATCCCCTGAACGATACAGGAGCAGCTTGTGTCGAAGCTCGTTCAGTCCTTCAGAAGCAATCAAAGCCAGCCGCTCCAGTTCTCTCACCACTCTAATCCTTGGGTTTAGGCTTGAAACGTCGGGGAGGTCAACCCTTAGCTTCACGCATTCCTCAAATTTCGCAATGCTTCTCCACCAACAGAAGGACGACATTTTGGAGTTGGAGGACTCATACTCGTCTTCGACGTTGCAATATGTGTGGCTTTTcatttttgaattcaaaattgtAGTGATAAGAGAAGCAGAGAAGAGGTGCAGGGATTGCCACACAAGGACAACCCCAATGTGGAGGGCTGGTCCCGATGGGCCGAGGTCACTTTGCAATGCCTGCGGGCTACGATTCAGAAAAAGGAGGAAGGGTGTTCAAGGGTTGGATGGAGTAGGAGCACAGAAGAGACCGAAGAGTAGAAGCCTGGAGAGGCAGGGATCAAGTGGAAGGCAATTCAAGctaaaagaggaagaagaagcggCAGTATTGCTGATGGCTCTTTCTTTATGTACGAGAGTCCTGACTAGTGACGTAAATGCTTCTGGCCTCGCCAGAGCCTTCCACAACCTTCCTCCACCATCTAAAAAAAGGAAGCACCTTGTGCTTAGTTTCTTTCTCGCAATCCTAAATTACCCGAGACGTCGCCACGTCACTGGCTTCTTACATGTGTCGAGTAAACTCCAGAAGATCCCTCCCGCCCTTTTTCTACGCTTCTCATGCTCATCTTCTTCATCCTACTCCAATCACTCTCATCTTTCTGCAACTCCCATATTTGAAATTAGAGAAAGCAATAAGATGCAGTCAATGCTTGTAGGAAACACAGCAAGGACTTCTTTAGGGATCATAGCTTGTGCTCGCCTTCGTAGTCTCCAGCGAGCACTTTCCTCTGCCTCCCGGAGTCGAACCGCTGATCCCGCCATTCATTCTGGAGAACGAGAAGCCGGTCCAGCGGTTAACAAAGGAGAACCCCAAGGAACAACCAACACAACCGACGCCAAATTTGCGGAAACAGAGCACGTGCCTAAAGAAGACGAGTTTCTTGAATTTCCCCAATCTCCTCATCAATCCTCCGTCAAACTCAAGAGCTCAGGGGTGAATCAACGATTGGATCCAATGGTTCAACAGAAGCGGAAGCAGGGATCGATGGCGGTGGAAGAGGTGAGCTGTGCGGGTCTAGATGGAAGCCCGTGGCCAGATGACGAGAGGAATAGAGGGGAAAAGCTAGAGGATGAAAGAGAATATTATCAACATCACAAAGCATCGCCGTTGTCGGAATTGAAGTTCGCGGATTCTCGGAAGCCAATTACTCGAGCGACGGACGGGACCGCCGATTCTGGAGCAGGTAGGGATGTGATTGGTTGGCTTCCGGAGCAGCTTGACACGGCGGAGGATTCGCTCAGAAGGGCTACTGAGATATGGAGGCAAAACGCGATGCGTGGGGACCCTGATGCCCCACAATCAAGGGTTCTTAGAGCTCTTCGTGGTGAAGATTTTTGA 1668 0.4904 MSPERPRTLYMRLTRELFPEPEKPTKRIVMSWGMSILSLLIPPVGSQKSPERYRSSLCRSSFSPSEAIKASRSSSLTTLILGFRLETSGRSTLSFTHSSNFAMLLHQQKDDILELEDSYSSSTLQYVWLFIFEFKIVVIREAEKRCRDCHTRTTPMWRAGPDGPRSLCNACGLRFRKRRKGVQGLDGVGAQKRPKSRSLERQGSSGRQFKLKEEEEAAVLLMALSLCTRVLTSDVNASGLARAFHNLPPPSKKRKHLVLSFFLAILNYPRRRHVTGFLHVSSKLQKIPPALFLRFSCSSSSSYSNHSHLSATPIFEIRESNKMQSMLVGNTARTSLGIIACARLRSLQRALSSASRSRTADPAIHSGEREAGPAVNKGEPQGTTNTTDAKFAETEHVPKEDEFLEFPQSPHQSSVKLKSSGVNQRLDPMVQQKRKQGSMAVEEVSCAGLDGSPWPDDERNRGEKLEDEREYYQHHKASPLSELKFADSRKPITRATDGTADSGAGRDVIGWLPEQLDTAEDSLRRATEIWRQNAMRGDPDAPQSRVLRALRGEDF 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3671 555 MobiDBLite consensus disorder prediction 184 207 - -
Sto13g3671 555 MobiDBLite consensus disorder prediction 353 386 - -
Sto13g3671 555 CDD ZnF_GATA 145 179 IPR000679 GO:0006355|GO:0043565
Sto13g3671 555 Gene3D - 140 215 IPR013088 GO:0006355|GO:0008270
Sto13g3671 555 PANTHER OS07G0675200 PROTEIN 323 555 - -
Sto13g3671 555 MobiDBLite consensus disorder prediction 532 555 - -
Sto13g3671 555 SMART GATA_3 140 202 IPR000679 GO:0006355|GO:0043565
Sto13g3671 555 ProSiteProfiles GATA-type zinc finger domain profile. 140 176 IPR000679 GO:0006355|GO:0043565
Sto13g3671 555 ProSitePatterns GATA-type zinc finger domain. 146 171 IPR000679 GO:0006355|GO:0043565
Sto13g3671 555 MobiDBLite consensus disorder prediction 488 507 - -
Sto13g3671 555 Pfam GATA zinc finger 146 179 IPR000679 GO:0006355|GO:0043565
Sto13g3671 555 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 142 179 - -
Sto13g3671 555 MobiDBLite consensus disorder prediction 193 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3671 Sto-Chr13 38813436 38816348 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3671 103 225 C2C2-Gata Transcription Factor Family AT5G49300 37.415 3.30e-18 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sto13g3671 GATA 9.1e-17 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3671 13 38813436 38816348 Sto13g3671 13 38813436 38816348 ECH