Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3655 ATGAAAACGAAGGGAAGCACCGGTAATGCCCTTGTTAAGGTCAGTGGGTTCAGTACAGTTGAGAGAAGGAGAGAGTTCAAGGTTTTAGCTGAAGGTGGATTAAGCATGTGTGGTGGTGCTATCATCTCTGACTTCATTCCTGCCCAACGTGGTCGCCGTCTTACCGCCTCCGATCTTTGGCCTAACCAACTCTCTAATCACGATGCCTTCCATCTCCATTCTTCTCCGCCGTTCCACgatccctctcttcccctccaAAACCCCCAGTTTTCCTCCTCCCCAGATAGCAAGCAAGTCGAGAAGCCGGCGAAGAGGCAGAGGAAGAACCTTTACAGAGGAATTCGGCGCCGTCCATGGGGGAAGTGGGCGGCTGAGATTCGCGATCCCAGGAAAGGGGTTCGTGTGTGGCTCGGTACCTTCAACACTGCCGAAGAAGCCGCCAGGGCCTACGATAGAGAGGCTCGCAAAATCCGCGGAAAGAAAGCTAAGCTCAATTTTCCCGACCAACACCCTCACTCCACCACGTCTTCTCTGTACGCTAATTCCAATAATGCCGCCTCAGTAAATCTGAATTTGGAGTTTGGTTATGATCTGAACCTGAACCAAGTTGGGCCTATTTGTGACCCATCAGAGGCATCAACGGACTTCATGGGCTCCAATCACAAGGCCAAGGGAAAGGCGAGTGAGGAAGACGGCCACCAAGTAGAGAAGCTATCGCAGGAGATGATGGCGTACGATAACTTCATCAAGTTATATCAGATTCCCTACTACGATGCACAATCCACTACACAGAATAACGTGGCTGCTGACCTCTGGGGCTTCAACGAAGGCCTTCCTTCATGTGTGACGTCGTCAGccctttga 864 0.4977 MKTKGSTGNALVKVSGFSTVERRREFKVLAEGGLSMCGGAIISDFIPAQRGRRLTASDLWPNQLSNHDAFHLHSSPPFHDPSLPLQNPQFSSSPDSKQVEKPAKRQRKNLYRGIRRRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKLNFPDQHPHSTTSSLYANSNNAASVNLNLEFGYDLNLNQVGPICDPSEASTDFMGSNHKAKGKASEEDGHQVEKLSQEMMAYDNFIKLYQIPYYDAQSTTQNNVAADLWGFNEGLPSCVTSSAL 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3655 287 ProSiteProfiles AP2/ERF domain profile. 110 167 IPR001471 GO:0003700|GO:0006355
Sto13g3655 287 MobiDBLite consensus disorder prediction 71 107 - -
Sto13g3655 287 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Sto13g3655 287 PRINTS Ethylene responsive element binding protein signature 133 149 IPR001471 GO:0003700|GO:0006355
Sto13g3655 287 PANTHER EREBP TRANSCRIPTION FACTOR 92 220 - -
Sto13g3655 287 PANTHER EREBP TRANSCRIPTION FACTOR 36 66 - -
Sto13g3655 287 CDD AP2 111 169 IPR001471 GO:0003700|GO:0006355
Sto13g3655 287 SMART rav1_2 110 173 IPR001471 GO:0003700|GO:0006355
Sto13g3655 287 PANTHER DNA-BINDING DOMAIN 36 66 IPR044808 GO:0003700|GO:0009873
Sto13g3655 287 PANTHER DNA-BINDING DOMAIN 92 220 IPR044808 GO:0003700|GO:0009873
Sto13g3655 287 SUPERFAMILY DNA-binding domain 110 168 IPR016177 GO:0003677
Sto13g3655 287 Pfam AP2 domain 111 159 IPR001471 GO:0003700|GO:0006355
Sto13g3655 287 Gene3D AP2/ERF domain 110 168 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3655 Sto-Chr13 38737380 38741298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3655 36 170 AP2-EREBP Transcription Factor Family AT3G16770 56.429 5.67e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto13g3655 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3655 K09286 - gmx:100819416 239.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3655 13 38737380 38741298 Sto13g3655 13 38737380 38741298 ECH