Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3632 ATGAGTAGACGTTCGAGTACAACTGTCTATGTTGGGAATCTACCTGGTGATATTCGTGAAAGGGAAGTGGAAGATTTATTTCTTaagTATGGACACATAACTCATATTGACCTAAAGGTTCCCCCGAGGCCCCCCGGTTATGCATTTGTAGAATTTGAAGATGCTCAAGATGCTGAAGATGCAATTCGTGGGCGTGATGGCTATGATTTTGATGGGCACCGATTACGGGTGGAGCCTGCACATGGTGGACGTGGTAATTCATCATCAAGAGATCGATATAGTAGTCACAACAGTGGTCGGGGTGGACGCGGAGTGTCTAGGCGCTCTGAATATTCTGGGTTGCCCTCGTCTGCTTCCTGGCAGGATCTCAAGGATCACATGCGTAAGGCAGGAGATGTTTGTTACTCTCAAGTTTTCAATGATAGAAGAGattatttaatgtattatgGTTGTTTTGTAGGTACTACAGGGATTGTGGATTACACAAACTCTGATGACATGAAGTATGCAatcaagaaacttgatgactCTGAGTTCCGGAATGCTTTTTCCAGGGCTTATGTTCGAGTATGA 573 0.4241 MSRRSSTTVYVGNLPGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGNSSSRDRYSSHNSGRGGRGVSRRSEYSGLPSSASWQDLKDHMRKAGDVCYSQVFNDRRDYLMYYGCFVGTTGIVDYTNSDDMKYAIKKLDDSEFRNAFSRAYVRV 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3632 190 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Sto13g3632 190 Gene3D - 1 111 IPR012677 -
Sto13g3632 190 Gene3D - 112 190 IPR012677 -
Sto13g3632 190 MobiDBLite consensus disorder prediction 87 102 - -
Sto13g3632 190 CDD RRM1_SF2_plant_like 8 78 - -
Sto13g3632 190 MobiDBLite consensus disorder prediction 73 117 - -
Sto13g3632 190 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Sto13g3632 190 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 181 IPR000504 GO:0003723
Sto13g3632 190 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 3 186 - -
Sto13g3632 190 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 3 186 - -
Sto13g3632 190 SUPERFAMILY RNA-binding domain, RBD 5 182 IPR035979 GO:0003676
Sto13g3632 190 SMART rrm1_1 112 189 IPR000504 GO:0003723
Sto13g3632 190 SMART rrm1_1 8 78 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3632 Sto-Chr13 38590549 38592833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3632 3 80 Eukaryotic Initiation Factors Gene Family AT3G11400 34.568 1.48e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3632 K12890 - gmx:100789847 308.916