Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3627 atgaaGTTCACCAAGAAATACGATGAGTACATTCGAGGCCAGAAGGAGAAACTGCCTGGAGTTGGTGTCAAGAAGCTTAAGAAGATATTGAAAAAGTGTAGCAGAGAGTGTCAATGCCGCAAAGGCCTCAATCAAGCCCTTCGGCTCCCAATCTGCACCGATCAATGTCCTGTGTGCGATGGGGgcttcttcccttcccttctcaatGAGATGACTGAAGTAGTAGGTTGCTTTAATGAGCGTGCACAAAAACTGCTGGAGCTACATCTTGCTTCTGGTTTCAGAAAGTACTTTTTCTGGTTCAAAGGTAAATGTGGAACTGGAAACCATACTGCCCTAGTTCAAGAAGGGAAAGAACTGGTTACTTATGCATTAATTAATGCTATTGCAGTTCGGAAGATACTAAAGAAATATGATAAGGTGAAAATTATGACAAATGTTCTTCACATATTTTTACTGCTGCCGAGAGTGCAGATTCATTGTTCGAAGCAAGGGCAAATATTTAAGTCACAAGCCCAGAGTATGCACGTGGAAATTCTTCAGAGTCCCTGGCTTTGTGAGCTTATGGCCTTCCACATCAATTTAAGGGAAACCAAGAACAAACCGATGGAGAAGGCACTGGCTTTGTTTGATGGATGTCTCCTGACGGTTAAGGATGACAGGCCATCACTTAGTTGTGAGCTCTTTGATTCCATCAAACTTGACATTGACTTGACTTGTTCTATATGCTTGGACACAGTATTTGATCCAGTTTCTCTTACATGTGGCCATATATTCTGCTACATGTGTGCTTGCTCATCTGCTTCAGTAACTATTGTTGATGGACTTAAGGCAGCGGATCCAAAAGCAAAATGTCCTCTATGCCGAGTGGGAGGAGTTTATGAAGGTGCTGTACGCTTGGAAGAACTAAATATTCTGTTAGGCCGAAGGTATAGTAGTTCCCCTTGCTTCACAACAATCATACTCTTCCTCAAATTGGGTGGGAGAAGGGGAAGAAGTGGATAA 1005 0.4149 MKFTKKYDEYIRGQKEKLPGVGVKKLKKILKKCSRECQCRKGLNQALRLPICTDQCPVCDGGFFPSLLNEMTEVVGCFNERAQKLLELHLASGFRKYFFWFKGKCGTGNHTALVQEGKELVTYALINAIAVRKILKKYDKVKIMTNVLHIFLLLPRVQIHCSKQGQIFKSQAQSMHVEILQSPWLCELMAFHINLRETKNKPMEKALALFDGCLLTVKDDRPSLSCELFDSIKLDIDLTCSICLDTVFDPVSLTCGHIFCYMCACSSASVTIVDGLKAADPKAKCPLCRVGGVYEGAVRLEELNILLGRRYSSSPCFTTIILFLKLGGRRGRSG 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3627 334 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 311 IPR033326 -
Sto13g3627 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 315 IPR013083 -
Sto13g3627 334 SMART ring_2 240 288 IPR001841 -
Sto13g3627 334 ProSitePatterns Zinc finger RING-type signature. 255 264 IPR017907 -
Sto13g3627 334 ProSiteProfiles SPX domain profile. 1 152 IPR004331 -
Sto13g3627 334 Pfam Zinc finger, C3HC4 type (RING finger) 240 288 IPR018957 GO:0046872
Sto13g3627 334 ProSiteProfiles Zinc finger RING-type profile. 240 289 IPR001841 -
Sto13g3627 334 SUPERFAMILY RING/U-box 233 290 - -
Sto13g3627 334 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3627 Sto-Chr13 38566282 38569260 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3627 237 289 C3H Transcription Factor Family AT4G28270 41.379 3.79e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3627 K16275 - gmx:100797432 450.669