Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3626 ATGAAGTTCACCAAGAAATACGAGGAGTACGTGCACGGGCGGAATGAGAAACTGCCTGGAGTTGGTGTCAAGAAGCTTAAGAAGATATTGAAGAAGTGTAGCAGAGACTGTAAGTCCCGGAAAGGCCTCAATGAATCCCTTGGTGTCCCAACCTGCACCGATCATTGTCCTGTGTGCGATGGGGGCTTCTTCCCTTCCCTCCTCAATGAGATGACAGAAGTAGTTGGTTGCTTTAATGAGCGAGCCCAAAAATTGCTGGAGCTACATCTTGCTTCTGGCTTCAGAAAGTGCTTTTTCTGGTTCAAAGGCAAATGTGGAAACCATACTGCTCTAGTTCAAGAAGGGAAAGAACTGGTTACTTATGCATTAATTAATGCTATTGCAATCCGGAAGATACTAAAGAAATATGATAAGATTCATTACTCGAAGCAAGGGCAAATGTTTAAGTCACAAGCCCAGAGTATGCACAAGGAAATTCTTCAGAGTCCCTGGCTTTGTGAGCTTATGGCCTTCTACATCAATTTAAGGGAAACCAAGAACAAACCCATGAAGAAGGCACTAACTTTGTTTGATGGATGTCTCCTCACAGTTAAGGATGACAGACCATCACTTCGTTGTGAGCTCTTTGATTCCATCAAACTTGACATTGACTTAACTTGTTCCATATGCTTGGACACAGTATTTGATCCAGTTTCTCTTACATGTGGCCATATATTCTGCTACATGTGTGCTTGCTCATCTGCATCAGTAACTATTGTTGACGGACTCAAGGCAGCGGATTCCAAAGCTAAATGTCCGCTGTGCAGAGTGGGAGGAGTTTATGAAGGTGCTGTACGATTGGAAGAATTAAATATTCTGTTAGGCCGATGTTGCCCGGAGTACTGGGAAGAAAGGCTTCAGTCAGAGAGGGTAGAGAGAGTTAAGCAAATAAAGGAGCACTGGGAATCGCAGTGTAGGGCGTTCGTGGGCGTCTAA 975 0.441 MKFTKKYEEYVHGRNEKLPGVGVKKLKKILKKCSRDCKSRKGLNESLGVPTCTDHCPVCDGGFFPSLLNEMTEVVGCFNERAQKLLELHLASGFRKCFFWFKGKCGNHTALVQEGKELVTYALINAIAIRKILKKYDKIHYSKQGQMFKSQAQSMHKEILQSPWLCELMAFYINLRETKNKPMKKALTLFDGCLLTVKDDRPSLRCELFDSIKLDIDLTCSICLDTVFDPVSLTCGHIFCYMCACSSASVTIVDGLKAADSKAKCPLCRVGGVYEGAVRLEELNILLGRCCPEYWEERLQSERVERVKQIKEHWESQCRAFVGV 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3626 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 324 IPR033326 -
Sto13g3626 324 Pfam Zinc finger, C3HC4 type (RING finger) 220 268 IPR018957 GO:0046872
Sto13g3626 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 322 IPR013083 -
Sto13g3626 324 ProSiteProfiles SPX domain profile. 1 150 IPR004331 -
Sto13g3626 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 324 - -
Sto13g3626 324 SMART ring_2 220 268 IPR001841 -
Sto13g3626 324 ProSiteProfiles Zinc finger RING-type profile. 220 269 IPR001841 -
Sto13g3626 324 SUPERFAMILY RING/U-box 213 270 - -
Sto13g3626 324 ProSitePatterns Zinc finger RING-type signature. 235 244 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3626 Sto-Chr13 38560934 38564140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3626 217 269 C3H Transcription Factor Family AT4G28270 41.379 3.58e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3626 K16275 - gmx:100797432 532.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3626 13 38560934 38564140 Sto13g3626 13 38560934 38564140 ECH