Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3604 TTGAAGTTATacgaaaatgaagaagaagatggaggagtGATAAAGGAGCAAGATCGGCTACTTCCAATAGCTAATGTGGGAAGAATCATGAAGCAAATTCTGCCTTCAAACGCCAAGATCTCCAAAGAAGCCAAAGAGACGATGCAAGAGTGTGTGTCGGAGTTCATCAGCTTCGTCACAGGAGAAGCCTCCGACAAGTGTCACAAGGAGAAGCGTAAGACCGTTAATGGCGACGATATTTGCTGGGCCTTAGCCACGCTTGGCTTCGATGACTACGCTCACCCACTCAAGAGGTTTCAATCTGAATTTTGGCGAATGCTTcctaaaatatatgatttcctTTAA 345 0.3971 LKLYENEEEDGGVIKEQDRLLPIANVGRIMKQILPSNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAHPLKRFQSEFWRMLPKIYDFL 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3604 114 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 20 84 IPR003958 -
Sto13g3604 114 ProSitePatterns NF-YB/HAP3 subunit signature. 51 67 IPR003956 GO:0005634|GO:0006355|GO:0043565
Sto13g3604 114 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 5 103 - -
Sto13g3604 114 PRINTS CCAAT-binding transcription factor subunit A signature 86 104 - -
Sto13g3604 114 PRINTS CCAAT-binding transcription factor subunit A signature 67 85 - -
Sto13g3604 114 PRINTS CCAAT-binding transcription factor subunit A signature 48 66 - -
Sto13g3604 114 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 5 103 IPR027113 GO:0001228|GO:0006355|GO:0016602
Sto13g3604 114 SUPERFAMILY Histone-fold 17 105 IPR009072 GO:0046982
Sto13g3604 114 Gene3D Histone, subunit A 12 107 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3604 Sto-Chr13 38435765 38436744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3604 5 99 CCAAT-HAP3 Transcription Factor Family AT2G47810 81.053 1.14e-55 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Sto13g3604 CBFD_NFYB_HMF 3.1e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3604 K08065 - mnt:21392404 176.792
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3604 13 38435765 38436744 Sto13g3604 13 38435765 38436744 ECH