Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3602 ATGTCAAATATGAATTCAGATCCAAATGCTGAAGTGATAGCTTTATCGCCAACCACATTAATGGCAACAAACAGATTTGTGTGTGAGATATGCAACAAAGGGTTTCAGAGAGATCAAAACCTGCAATTGCACAGGAGAGGTCACAATCTGCCATGGAAACTGAGACAGAGAGCAAGCAATGAAGTGAGCAAGAAAAGAGTGTACGTGTGCCCTGAACCATCGTGCGTCCACCATAACCCTGCTCGCGCACTCGGAGACCTCACCGGCATCAAAAAGCACTATAGCCGCAAACACGGCGAGAAGAAATGGAAATGTGATAAGTGCTCTAAAAAATACGCCGTCCAGTCCGATTGGAAAGCCCATCAAAAGACCTGTGGTACTCGTGAATACAAATGCGATTGCGGTACCATTTTCTCCAGGAGAGACAGTTTCATCACCCACAGGGCCTTTTGTGACGCTTTAACCGAAGAAAACAACAGACTACTCACCCACACCGCACCAAGTTCCACTTCAATATTATCGGAATTCAAAGCCCAAGAGCCGCTAGGCCCAATTCCATTCAAGCCCATGAGTATGTGTGGTGGCATGTTCTCCACCACTTCCGCCGCACTTTTCGGAGGCCCAAAAGCCTTGTCTCCTGCTTCCTCTTCTTCCACCCTCCAGCTCAGTTCTGACGTCAATTACTTGCCATTCCAAGATGGCAAAaacggaggaggaggaggaggcctTGCTTCTGGGTCGGCCCACATGTCCGCCACAGCCTTGTTACAGAAAGCGGCCCAAATGGGAGCCACTGCTAGCAGCAACAATAACACCATGAACTCTCCCTTCATTCAGAAGGGGTTTGTTAATGTTAGTAGTACTAGTTCCATGAGACCACCCTATCACGATGTGGTTTAtgaatcaaataataataagatcAGTGGAGGAGGGGCATTCACAAACCAAGTGTTCGAGAAAGATGAAATCTCTCCGTTGTTGCACGCAAATAATAATGAGATGGGAATGTTGAGCCAAATGTTGATGGGAAGTGATCATCACCAAAACACAATAGTAAcaggaggaaatgagaatggaaatgactTGACCACAATTCATGACTTCTTGGGCGTTGGGAGTTCCACCTCCTTGCCACCCACTACTTTGCACGATGACTTCCACACTAGCCTCGCCAATCATCCAGATTGGAGTTGGAAGCAATTGTGA 1206 0.4436 MSNMNSDPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRASNEVSKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRLLTHTAPSSTSILSEFKAQEPLGPIPFKPMSMCGGMFSTTSAALFGGPKALSPASSSSTLQLSSDVNYLPFQDGKNGGGGGGLASGSAHMSATALLQKAAQMGATASSNNNTMNSPFIQKGFVNVSSTSSMRPPYHDVVYESNNNKISGGGAFTNQVFEKDEISPLLHANNNEMGMLSQMLMGSDHHQNTIVTGGNENGNDLTTIHDFLGVGSSTSLPPTTLHDDFHTSLANHPDWSWKQL 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3602 401 ProSiteProfiles Zinc finger C2H2 type domain profile. 26 48 IPR013087 -
Sto13g3602 401 Gene3D Classic Zinc Finger 2 73 - -
Sto13g3602 401 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 5 373 - -
Sto13g3602 401 SUPERFAMILY beta-beta-alpha zinc fingers 25 124 IPR036236 -
Sto13g3602 401 Pfam Zinc finger, C2H2 type 26 48 IPR013087 -
Sto13g3602 401 Gene3D Classic Zinc Finger 82 160 - -
Sto13g3602 401 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 5 373 - -
Sto13g3602 401 ProSitePatterns Zinc finger C2H2 type domain signature. 28 48 IPR013087 -
Sto13g3602 401 SMART c2h2final6 103 123 IPR013087 -
Sto13g3602 401 SMART c2h2final6 26 48 IPR013087 -
Sto13g3602 401 SMART c2h2final6 68 98 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3602 Sto-Chr13 38422821 38424280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3602 7 267 IDZ Gene Family AT3G50700 57.003 5.56e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto13g3602 zf-C2H2 0.0038 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3602 - - gmx:100782774 455.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0883 8 5590021 5591840 Sto13g3602 13 38422821 38424280 CCT
Sto13g3602 13 38422821 38424280 Sto13g3602 13 38422821 38424280 ECH