Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3594 ATGGGTGCTGATCTCCGGAGCATCATTGCTGAAACAGCTTGCCTTCCGCGCAACTTTGATCGAGTTCGCATTCAACACAGATGGCGTGTGCTGATTCAAGACAATGTTGGAAGGATGAGTAGCATGAAGCTGAAGCCAACGGCGAAGACCCTGGGACCCTCAACACAAAAGAATCCCGTTTTCATGGAGTTGTATGGTCGAAATCCGACAAGAAATGGGTCTCAACCGGGTTATCAATCTGAGTGGCGCCCAGCAACCGGTGACACTGGGCTAGAAGAATCGATGTGGCACTTAGCACTAAGTAGCAGCGAATCATACCCGGAGCGACCCGGCGTCCCGAATTGTGTGTATTATATGCGAACCGGGTTCTGTGGATATGGTAGCAGGTGTCGTTACAATCATCCCCGTGATCGCGCTGCGGTTGCTGCTGCTGTAAGAGTTACAGGGGAGTACCCAGAACGGGTGGGTGAACCTCCATGTCAGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGTATAACTTGTAAATTCCATCATCCTCAACCAGCTGGCACATCAATGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCCACGGTTCCTCTGCCTGAACAGTTTGGGGGGGCATCCACCAGCTTGAGAGTTGGAGTGGCTAGGCCTCCAATGATGCCTGGTTCATATGTGCAAGGGGCTTATGGTCCTGTACTTCTTTCCCCTGGGGTTGTTCCCTTTCCAGGATGGAGTCCTTATTCGGCACCTGTAAGTCCTGTGTTGTCTCCTAGTGCTCAACCAGCTGTTGGCGCTACTTCTTTGTATGGAGTGACCCAGATGTCTTCGTCAACATCAGCTTTTGCCAGACCATATGCTCCTCTGCTCTCTTCTGTTGGCTATTCAGGCAGCAGCCAGAAAGAACAACTATTTCCTGAAAGACCTGGTGAACCAGAATGCCAATATTATCTGAGAACAGGGGACTGTAAATATGGATTAGCTTGTCGATTTCATCATCCTAGGGATCGCACTGCGACACGTCCACTTCTCAGCCCCATTGGTCTTCCTTTACGTCCGGGGGTACAACCTTGTGCATTTTATTTGCAAAATGGGCATTGCAAGTTTGGCTCCACCTGCAAATTTGACCATCCTATGGGGTCTATGAGATTCAGTCCTTCAGCATCTTCTCTCATTGATATGCCGGTTTCTCCATACCCAGTTGGGTCTTTGTTGTCTACCCTGGCTCCTTCAACAGCATCTTCAGAGCTTCGGCCTGAACACACGTCAGCCTCCAAAAAGGAATCCTTTTCAACCAGGATGCCTTCTGCTGGAAATAATTCCAGCACTTCTGCCAGTTTGATTTTCTCACAGGCTGGATCCGTCTCACCATCTGATGTGCAACTCTCAACTCAGACTTCTGCCCCTCTAAGCAGTAGCAGAAGCACGAGACAAAGTGGTGAGATTCGTGGGCCAATATCTGATGTCTCTAGTGACCTTGCCATCGAAGTTGGATCATCAAGCTTTGCACTTCACAAGTTTCCTCTAGTTTCTCGGTGTGGAAGAATTCGGAAACTGCTGTTAGAAGTCAAAGATTCAAAAGTTGCACGCATTAGTCTTTCAGCTGTACCaggtggagcagaggcatttGAGCTAGCTGCCAAGTTCTGTTATGGAATTAATGTTGAGTTCATCCTGTCAAACATTGCTATGCTTCGATGTTTAGCCCATTTTCTGGAAATGACAGAAGAGTTTGCAGAGAAAAACTTGGAGAGCCATGTTGAAGCTTATCTAAAGGACACAGTGCTCCCAGATATACCAAGCACAATAACTGTTCTTCATTGTTGTGAAACTCTTCTGCCCATATCGGAGGACATAAACCTTGTTAGTAGGCTAATCAATGCAATTGCAAATAATGCCTGCAAAGAGCAGCTCACCTCCGGTTTGCTTAAGCTTGATCACAATTTCCCTTCCAAAACTATGTCAAACTTGGAGCCAGAAACGCCTTCAGATTGGTGGGGAAATTCTCTCAATGTTCTTGGTCTTAATTTCTTCCGACGAGTTGTCTCTGCTGTAAAGTCAAAGGGACTAAACCAGGACATGATCAGCAAAATTCTGATAAGCTATGCACATAATTCCCTTCAGGGAATTGTTGTTAGGGACTCCCAAGGGATCAAAGGAAGTTCAGTGGATTTAGAATTGCAGAAGAAACAAAGGGTGATTGTTGAGGCCATTGTTAGCTTACTACCAACTCAATCAAGGAAAAGCCCAGTCCCAATGGCATTTCTTTCAAGTTTGTTGAAAGCTGCAATAGAATCATCAGCTTCTACTTCTACCAGATCTGATTTGGAGAGGAGGATCGGTCTACAGCTTGACCAGGCAATTCTTGAAGACATCCTAATCCCAGCAAACTCCCATCAAAACACCAACACCTCAATTTACGACATAGACTCAATCCTAAGgatcttttctatttttctaaACTTAGATGAGGATGACAATGAAGACAGTAGTGACTTGAGAGATGAAAATGAGATGGTATATGACTTTGACAGTCCTGGATCTCCAAAACAGAGCTCAATTATCAAGGTATCTAAGTTGCTGGACAATTTTCTTTCTGAAATAGCTCTAGACCCAAACATGTTGCCATCAAAATTCACAGCACTTGCAGAACTACTTCCAGACCATGCACGTATTGTGAGTGATGGACTTTACCGAGCTGTTGATATCTTCCTTAAGGTTCATCCAAACATGAAGGAGTCAGAGAGGTACCGGCTGTGCAAGAGCATAGATTGTCAGAAACTGAGTGAAGAAGCATGCAGACACGCGGCACAAAATGAGAGGCTGCCGGTGCAGATGGCAGTGCAAGTACTGTACTTCGAGCAAATAAGGCTTCGGAATGCAATGTCTGGAGGGGGGCAGAACCAGTTGTTGTTCGGAGGGCTGAATGGTCAATTCCCTCAGCGTTCAGGAAGCGGGGCGGGAAGTGGAGCCATTTCGCCAAGAGATAACTACGCATCGGTGAGAAGAGAGAACAGAGAGCTGAAGCTTGAGGTTGCGAGAATGAGGATGAGGCTGACGGACTTAGAGAAAGATCACGTTCATATGAAGCAGGAATTTGTGAGGTCTAATCCTGCAAATAGGCTCTTCAAATCCTTCACTAACAAACTCAGCAAACTCAATTCTCTCTTTCGGATTAACAGTATTAAGCCAATTCGAGGCTCAGAAAGTCGCTTCCCTTTTCCAAGACGAAGGCGTCACTCGGTTTCATGA 3285 0.4575 MGADLRSIIAETACLPRNFDRVRIQHRWRVLIQDNVGRMSSMKLKPTAKTLGPSTQKNPVFMELYGRNPTRNGSQPGYQSEWRPATGDTGLEESMWHLALSSSESYPERPGVPNCVYYMRTGFCGYGSRCRYNHPRDRAAVAAAVRVTGEYPERVGEPPCQGEKECSYYLKTGQCKFGITCKFHHPQPAGTSMPASAPQFYQQVQSPTVPLPEQFGGASTSLRVGVARPPMMPGSYVQGAYGPVLLSPGVVPFPGWSPYSAPVSPVLSPSAQPAVGATSLYGVTQMSSSTSAFARPYAPLLSSVGYSGSSQKEQLFPERPGEPECQYYLRTGDCKYGLACRFHHPRDRTATRPLLSPIGLPLRPGVQPCAFYLQNGHCKFGSTCKFDHPMGSMRFSPSASSLIDMPVSPYPVGSLLSTLAPSTASSELRPEHTSASKKESFSTRMPSAGNNSSTSASLIFSQAGSVSPSDVQLSTQTSAPLSSSRSTRQSGEIRGPISDVSSDLAIEVGSSSFALHKFPLVSRCGRIRKLLLEVKDSKVARISLSAVPGGAEAFELAAKFCYGINVEFILSNIAMLRCLAHFLEMTEEFAEKNLESHVEAYLKDTVLPDIPSTITVLHCCETLLPISEDINLVSRLINAIANNACKEQLTSGLLKLDHNFPSKTMSNLEPETPSDWWGNSLNVLGLNFFRRVVSAVKSKGLNQDMISKILISYAHNSLQGIVVRDSQGIKGSSVDLELQKKQRVIVEAIVSLLPTQSRKSPVPMAFLSSLLKAAIESSASTSTRSDLERRIGLQLDQAILEDILIPANSHQNTNTSIYDIDSILRIFSIFLNLDEDDNEDSSDLRDENEMVYDFDSPGSPKQSSIIKVSKLLDNFLSEIALDPNMLPSKFTALAELLPDHARIVSDGLYRAVDIFLKVHPNMKESERYRLCKSIDCQKLSEEACRHAAQNERLPVQMAVQVLYFEQIRLRNAMSGGGQNQLLFGGLNGQFPQRSGSGAGSGAISPRDNYASVRRENRELKLEVARMRMRLTDLEKDHVHMKQEFVRSNPANRLFKSFTNKLSKLNSLFRINSIKPIRGSESRFPFPRRRRHSVS 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3594 1094 SUPERFAMILY CCCH zinc finger 365 394 IPR036855 GO:0046872
Sto13g3594 1094 SMART c3hfinal6 319 346 IPR000571 GO:0046872
Sto13g3594 1094 SMART c3hfinal6 162 187 IPR000571 GO:0046872
Sto13g3594 1094 SMART c3hfinal6 109 136 IPR000571 GO:0046872
Sto13g3594 1094 SMART c3hfinal6 363 390 IPR000571 GO:0046872
Sto13g3594 1094 ProSiteProfiles NPH3 domain profile. 675 968 IPR027356 -
Sto13g3594 1094 SUPERFAMILY CCCH zinc finger 163 188 IPR036855 GO:0046872
Sto13g3594 1094 ProSiteProfiles Zinc finger C3H1-type profile. 319 347 IPR000571 GO:0046872
Sto13g3594 1094 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 321 346 IPR000571 GO:0046872
Sto13g3594 1094 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 111 136 IPR000571 GO:0046872
Sto13g3594 1094 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 365 390 IPR000571 GO:0046872
Sto13g3594 1094 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 162 187 IPR000571 GO:0046872
Sto13g3594 1094 ProSiteProfiles Zinc finger C3H1-type profile. 363 391 IPR000571 GO:0046872
Sto13g3594 1094 Coils Coil 1009 1043 - -
Sto13g3594 1094 MobiDBLite consensus disorder prediction 421 455 - -
Sto13g3594 1094 SUPERFAMILY CCCH zinc finger 113 138 IPR036855 GO:0046872
Sto13g3594 1094 PANTHER OS12G0117600 PROTEIN 489 1087 IPR043454 -
Sto13g3594 1094 ProSiteProfiles Zinc finger C3H1-type profile. 109 137 IPR000571 GO:0046872
Sto13g3594 1094 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN SETH6 489 1087 - -
Sto13g3594 1094 MobiDBLite consensus disorder prediction 469 496 - -
Sto13g3594 1094 MobiDBLite consensus disorder prediction 439 455 - -
Sto13g3594 1094 Gene3D Potassium Channel Kv1.1; Chain A 484 607 IPR011333 -
Sto13g3594 1094 Pfam NPH3 family 675 944 IPR027356 -
Sto13g3594 1094 ProSiteProfiles Zinc finger C3H1-type profile. 161 188 IPR000571 GO:0046872
Sto13g3594 1094 SUPERFAMILY POZ domain 498 587 IPR011333 -
Sto13g3594 1094 Gene3D - 319 400 - -
Sto13g3594 1094 Gene3D - 109 197 - -
Sto13g3594 1094 SUPERFAMILY CCCH zinc finger 324 348 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3594 Sto-Chr13 38353633 38370458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3594 481 918 EF-hand Containing Proteins AT2G47860 57.627 6.90e-166 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto13g3594 NPH3 2.6e-84 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3594 - - zju:107406883 936.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0516 8 3183153 3186405 Sto13g3594 13 38353633 38370458 CCT
Sto13g3594 13 38353633 38370458 Sto13g3594 13 38353633 38370458 ECH