Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3584 TTGAAGCAGAGTTGTTGGGCTAATATGCCACCGGAGCTTTTGAGGGATGTGCTCATGAGAATAGAGGCCTCTGAAGATACCTGGCCTGCCCGAAAACATGTGGTTGCCTGTGCTGGTGTTTGCCGCAGTTGGAGAGAAATCATGAAAGAAATTGTGAAATCTCCTGAAGTATCTGGCAAATTGACACTCCCTATCTCCTTGAAGCAGCCTGGTCCAAGGGACTCTCTTCTTCAATGCTATATTAAACGGAATCGCAGTAATCAAACATATTATCTGTTCCTTGGCTTAAACCAAGCAGCTTCTACTGATGATGGCAAGTTCCTTCTTGCTGCACGCAAGTGTCGACGTCCTACCCACACAGACTATATCATTTCTCTAAATAGTGATGATGTTTCAAGAGGGAGTAGCACCTACATTGGAAAGTTGAGATCAAACTTTCTGGGAACCAAATTCACAGTGTATGTCACTAAATCTCGTTCAACCAGGCTAGTTAGTCTCAAGCAAGTGTCTCCAAGAGTTCCTGCTGGCAACTATCCCATTGCGCACGTCTCATATGATCTGAACGTGCTGGGCTCCAGGGGCCCAAGGATAATGCACTGTGTTATGGATGCCATTCCTGCTTCAGCTGTTGAACCGGGAGGTGTGGCCCCCACACAGACTCAATTCCTGCATAGCAGAATTGATACTTCTCCATCGATTCCTTTCTTTAGATCTAAATCAACCCGCATGGAAAATCTCCAGTCCGTACCTATGACTTCCCAAAACAAGGGAATACTAGTATTACAAAACAAGTCTCCTAGGTGGCACGAACAGCTCCAATGCTGGTGTCTAAACTTCAATGGAAGAGTGACTGTGGCTTCCGTGAAAAATTTCCAGCTGGTTGCTTCCCGGAAGAGTGGCGTTTCTGAACAGGCTCAGGAAAATGTTATCCTCCAGTTTGGAAAAGTGGGAAAGGATGTGTTCACCATGGATTATCAGTATCCAATCTCAGCTTTTGAAGCATTTGCAATATGCCTTAGCAGCTTCGACACCAAGATTGCTTGTGAATGA 1050 0.4533 LKQSCWANMPPELLRDVLMRIEASEDTWPARKHVVACAGVCRSWREIMKEIVKSPEVSGKLTLPISLKQPGPRDSLLQCYIKRNRSNQTYYLFLGLNQAASTDDGKFLLAARKCRRPTHTDYIISLNSDDVSRGSSTYIGKLRSNFLGTKFTVYVTKSRSTRLVSLKQVSPRVPAGNYPIAHVSYDLNVLGSRGPRIMHCVMDAIPASAVEPGGVAPTQTQFLHSRIDTSPSIPFFRSKSTRMENLQSVPMTSQNKGILVLQNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASRKSGVSEQAQENVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3584 349 Gene3D Tubby Protein; Chain A 66 343 IPR025659 -
Sto13g3584 349 Pfam F-box domain 6 52 IPR001810 GO:0005515
Sto13g3584 349 PANTHER TUBBY-RELATED 1 348 - -
Sto13g3584 349 PRINTS Tubby superfamily signature 122 138 IPR000007 -
Sto13g3584 349 PRINTS Tubby superfamily signature 177 204 IPR000007 -
Sto13g3584 349 PRINTS Tubby superfamily signature 279 295 IPR000007 -
Sto13g3584 349 PRINTS Tubby superfamily signature 138 162 IPR000007 -
Sto13g3584 349 PRINTS Tubby superfamily signature 306 325 IPR000007 -
Sto13g3584 349 PRINTS Tubby superfamily signature 261 278 IPR000007 -
Sto13g3584 349 PRINTS Tubby superfamily signature 327 349 IPR000007 -
Sto13g3584 349 Pfam Tub family 67 344 IPR000007 -
Sto13g3584 349 PANTHER TUBBY-LIKE F-BOX PROTEIN 3-RELATED 1 348 - -
Sto13g3584 349 SUPERFAMILY Tubby C-terminal domain-like 55 349 IPR025659 -
Sto13g3584 349 ProSitePatterns Tub family signature 2. 334 349 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3584 Sto-Chr13 38311568 38313910 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3584 1 349 TUB Transcription Factor Family AT2G47900 77.285 0.0 562
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Sto13g3584 Tub 5.3e-104 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3584 K19600 - gmx:100809257 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3584 13 38311568 38313910 Sto13g3584 13 38311568 38313910 ECH