Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sto13g3584 | TTGAAGCAGAGTTGTTGGGCTAATATGCCACCGGAGCTTTTGAGGGATGTGCTCATGAGAATAGAGGCCTCTGAAGATACCTGGCCTGCCCGAAAACATGTGGTTGCCTGTGCTGGTGTTTGCCGCAGTTGGAGAGAAATCATGAAAGAAATTGTGAAATCTCCTGAAGTATCTGGCAAATTGACACTCCCTATCTCCTTGAAGCAGCCTGGTCCAAGGGACTCTCTTCTTCAATGCTATATTAAACGGAATCGCAGTAATCAAACATATTATCTGTTCCTTGGCTTAAACCAAGCAGCTTCTACTGATGATGGCAAGTTCCTTCTTGCTGCACGCAAGTGTCGACGTCCTACCCACACAGACTATATCATTTCTCTAAATAGTGATGATGTTTCAAGAGGGAGTAGCACCTACATTGGAAAGTTGAGATCAAACTTTCTGGGAACCAAATTCACAGTGTATGTCACTAAATCTCGTTCAACCAGGCTAGTTAGTCTCAAGCAAGTGTCTCCAAGAGTTCCTGCTGGCAACTATCCCATTGCGCACGTCTCATATGATCTGAACGTGCTGGGCTCCAGGGGCCCAAGGATAATGCACTGTGTTATGGATGCCATTCCTGCTTCAGCTGTTGAACCGGGAGGTGTGGCCCCCACACAGACTCAATTCCTGCATAGCAGAATTGATACTTCTCCATCGATTCCTTTCTTTAGATCTAAATCAACCCGCATGGAAAATCTCCAGTCCGTACCTATGACTTCCCAAAACAAGGGAATACTAGTATTACAAAACAAGTCTCCTAGGTGGCACGAACAGCTCCAATGCTGGTGTCTAAACTTCAATGGAAGAGTGACTGTGGCTTCCGTGAAAAATTTCCAGCTGGTTGCTTCCCGGAAGAGTGGCGTTTCTGAACAGGCTCAGGAAAATGTTATCCTCCAGTTTGGAAAAGTGGGAAAGGATGTGTTCACCATGGATTATCAGTATCCAATCTCAGCTTTTGAAGCATTTGCAATATGCCTTAGCAGCTTCGACACCAAGATTGCTTGTGAATGA | 1050 | 0.4533 | LKQSCWANMPPELLRDVLMRIEASEDTWPARKHVVACAGVCRSWREIMKEIVKSPEVSGKLTLPISLKQPGPRDSLLQCYIKRNRSNQTYYLFLGLNQAASTDDGKFLLAARKCRRPTHTDYIISLNSDDVSRGSSTYIGKLRSNFLGTKFTVYVTKSRSTRLVSLKQVSPRVPAGNYPIAHVSYDLNVLGSRGPRIMHCVMDAIPASAVEPGGVAPTQTQFLHSRIDTSPSIPFFRSKSTRMENLQSVPMTSQNKGILVLQNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASRKSGVSEQAQENVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE | 349 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sto13g3584 | 349 | Gene3D | Tubby Protein; Chain A | 66 | 343 | IPR025659 | - | |
Sto13g3584 | 349 | Pfam | F-box domain | 6 | 52 | IPR001810 | GO:0005515 | |
Sto13g3584 | 349 | PANTHER | TUBBY-RELATED | 1 | 348 | - | - | |
Sto13g3584 | 349 | PRINTS | Tubby superfamily signature | 122 | 138 | IPR000007 | - | |
Sto13g3584 | 349 | PRINTS | Tubby superfamily signature | 177 | 204 | IPR000007 | - | |
Sto13g3584 | 349 | PRINTS | Tubby superfamily signature | 279 | 295 | IPR000007 | - | |
Sto13g3584 | 349 | PRINTS | Tubby superfamily signature | 138 | 162 | IPR000007 | - | |
Sto13g3584 | 349 | PRINTS | Tubby superfamily signature | 306 | 325 | IPR000007 | - | |
Sto13g3584 | 349 | PRINTS | Tubby superfamily signature | 261 | 278 | IPR000007 | - | |
Sto13g3584 | 349 | PRINTS | Tubby superfamily signature | 327 | 349 | IPR000007 | - | |
Sto13g3584 | 349 | Pfam | Tub family | 67 | 344 | IPR000007 | - | |
Sto13g3584 | 349 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 3-RELATED | 1 | 348 | - | - | |
Sto13g3584 | 349 | SUPERFAMILY | Tubby C-terminal domain-like | 55 | 349 | IPR025659 | - | |
Sto13g3584 | 349 | ProSitePatterns | Tub family signature 2. | 334 | 349 | IPR018066 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Sto13g3584 | Sto-Chr13 | 38311568 | 38313910 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Sto13g3584 | 1 | 349 | TUB Transcription Factor Family | AT2G47900 | 77.285 | 0.0 | 562 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | TUB | Sto13g3584 | Tub | 5.3e-104 | CL0395 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sto13g3584 | K19600 | - | gmx:100809257 | 654.055 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Sto13g3584 | 13 | 38311568 | 38313910 | Sto13g3584 | 13 | 38311568 | 38313910 | ECH |