Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3577 ATGGCggaggagaaggaagagaataAAACGAGTTTGAAACTTTTCGTAGGTCAGGTGCCGAAGCACGTGACGGAAGCTGAGCTGCTTGCAATGTTCAAGGAGTTTGCTCTGGTAGACGAGGTCAACATCATCAAGGATAAAGCTACTCGCGCCTCTCGAGGGTGTTGCTTTATAATTTGCCCGTCCAGACAAGAGGCCGATAAGGTGGTCAATGAGTGTCATAATAAGAAAATGCTACCTTGGGCATCTTGCCCATTGCAAGTGAAGTATGCGGATGGCGAGTTGGAAAGGCTAGAACACAAACTCTTTATTGGTATGCTTCCAAAGAATGTTTCTGAAGTTGAAGTGTCTGCTCTTTTCTCCAAGTATGGAGCTATAAAGgatttacatattttaagagGCTCTCTGCACACTAGTAAAGGCTGTGCATTTTTGAAGTATGAAACCAAAGATCAGGCCCTTGCTGCCCTGGAGGCAATCAATGGAAAGCATAAAATGGAGCATTTTGGACCTTCAAGCGACATTCAGCCACAAAATCCTGTTGGTGAGGGACGTGAACCATTAATATGTGTCTCAGATGTCATTGGTTCAAGTGCTCCATTAGTTGTCAAATGGGCCGATACAGAAAAGGAAAGACAAGCTCGGAGGGCTCTGAAAGCACAGTCCCAAGCTTTTAGTGTGCCACATACTAATTCTCAGCATCCATCATTGTTTGGAGCCTTGCCAATGGGTTATGTTCCTCCACATAATGGATATGATTATCAGACTGCCGTGGATTATGGGCTTTTGCCATATCGCTTGCCACTGATGCAGAATCAACCTGGTTTTCATAATATGATGCCTCACATGAATCAAGGAAATGCATTGCAGCTGGACCTTGGCTCCAATATGAAGCCTAGAAATTATCCTCTGCCTCGTGCTAGGTATGTTGGTTCATATCCTACAGTACCAGGTCTACAGCGTCCAATGGCATATCCCAGAGGAATGATAAGTCCAAGGCTTTTGAATAGTGCCCCTCCTGGAGGGAACAGCAATTCTGCTACCTTTTCAGTGACCAGTAAAAATTCCAGGACTCAGGTCGAAGGACCGCCCGGTgctaatctatttatttatcacATACCTGAAGAATTGGGGGATAAAGAGCTTGCAACTTCTTTTCAACCATTTGGCAGAGTTTTGAGTGCTAAAGTTTTTGTTGATAAAGCAACTGGTGTGAGCAAATGTTTTGGTTTTGTAAGCTATGATTCCCCAGAAGCTGCTGAATCTGCTATTAGTAGGATGAATGGATACGAATTAGGTGGTAAGAAACTAAAGGTTCAGCTTAAGAGGGAGAACAGACGAACGGTGACGAAGCTGAATGAACATATATAA 1371 0.4238 MAEEKEENKTSLKLFVGQVPKHVTEAELLAMFKEFALVDEVNIIKDKATRASRGCCFIICPSRQEADKVVNECHNKKMLPWASCPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSKYGAIKDLHILRGSLHTSKGCAFLKYETKDQALAALEAINGKHKMEHFGPSSDIQPQNPVGEGREPLICVSDVIGSSAPLVVKWADTEKERQARRALKAQSQAFSVPHTNSQHPSLFGALPMGYVPPHNGYDYQTAVDYGLLPYRLPLMQNQPGFHNMMPHMNQGNALQLDLGSNMKPRNYPLPRARYVGSYPTVPGLQRPMAYPRGMISPRLLNSAPPGGNSNSATFSVTSKNSRTQVEGPPGANLFIYHIPEELGDKELATSFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAESAISRMNGYELGGKKLKVQLKRENRRTVTKLNEHI 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3577 456 Gene3D - 1 97 IPR012677 -
Sto13g3577 456 CDD RRM1_2_CELF1-6_like 101 167 - -
Sto13g3577 456 SUPERFAMILY RNA-binding domain, RBD 100 445 IPR035979 GO:0003676
Sto13g3577 456 Gene3D - 337 443 IPR012677 -
Sto13g3577 456 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 366 444 IPR000504 GO:0003723
Sto13g3577 456 CDD RRM1_2_CELF1-6_like 13 89 - -
Sto13g3577 456 SUPERFAMILY RNA-binding domain, RBD 6 94 IPR035979 GO:0003676
Sto13g3577 456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 77 IPR000504 GO:0003723
Sto13g3577 456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 164 IPR000504 GO:0003723
Sto13g3577 456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 368 438 IPR000504 GO:0003723
Sto13g3577 456 Gene3D - 98 217 IPR012677 -
Sto13g3577 456 SMART rrm1_1 101 176 IPR000504 GO:0003723
Sto13g3577 456 SMART rrm1_1 13 89 IPR000504 GO:0003723
Sto13g3577 456 SMART rrm1_1 367 440 IPR000504 GO:0003723
Sto13g3577 456 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 163 IPR000504 GO:0003723
Sto13g3577 456 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 93 IPR000504 GO:0003723
Sto13g3577 456 PANTHER RNA BINDING PROTEIN 9 164 - -
Sto13g3577 456 PANTHER RNA BINDING PROTEIN 188 438 - -
Sto13g3577 456 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 188 438 - -
Sto13g3577 456 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 9 164 - -
Sto13g3577 456 CDD RRM3_CELF1-6 368 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3577 Sto-Chr13 38276720 38280466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3577 359 447 Eukaryotic Initiation Factors Gene Family AT1G22760 38.462 1.01e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3577 K13207 - gmx:100813239 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0533 8 3291646 3296271 Sto13g3577 13 38276720 38280466 CCT
Sto13g3577 13 38276720 38280466 Sto13g3577 13 38276720 38280466 ECH