Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3566 ATGAAGGAGAAGGTGGATTCCCCAGTTGGAGTTCTCGAGGAGTATTTCCAGAGTTCAGAGTCAGAAACAAGTTGTTCGAATTCCAAAGAAGAAAAGTCAAAGGGGAAGGGGAAGGGGGGTTCTAGATGGCGTGGATTTGTTCAATTGTTGAGGAGCACATCAAAGAAACCTATTGACACATTGCATCCTCTCGGTGTCCTCATGCTTTCCAAGAGAAGGAGCAGTAGCAAGAGGGAGACTACACTACCAAATTCAAATTCATCCCTCCACAGGCCACCCTGGAGGATCTTCACTCACCATGACATTCAAATGGCAACCAATCATTTCAGCCACAAGAAGTTGATTGGAAAAGGTGGTTATGCACAAGTATACGAAGGGCGTCTCCCAAATGGTGAGGTGGTAGCAATCAAACGCCTAACACGAGGAACACAAGATGAGATGATAGCAGATTTCTTAACAGAATTAGGCATAATGGCTCATGTCAACCATCCTAATACTGCTAAGTTGGTTGGCTATGGGGTTGAAGGCGGAATGTATCTTGTTCTTCAACTCTCTCAAAAAGGGAGCTTAGCTTCCCTGCTTTAtgGCTCTAAGGAGAAACTGGCATGGTGTGTGAGGCACAAGATTGCATTAGGAACAGCAAAGGGTATACTATATCTTCATGAGGGTTGCCATAAAAGAATTATCCACAGAGATATAAAGGCTGCAAATATCTTGCTGACGGATGATTTTGAGCCTCAGATTTGTGATTTTGGGCTGGCAAAATGGCTGCCACAGAGTTGGACTCACCACACCGTTTCAAAATTTGAAGGCACTTTTGGCTACCTTGCCCCAGAATACTTACTCCATGGAATAGTAGACGAGAAAACAGATGTATTTGCCTTGGGTGTACTACTATTAGAATTAGTGACCGGACGCCGAGCCCTTGATTATTCCCAACAGAGCCTTGTTTTGTGGGCAAAACCTTTGCTGAAAAAGAATGATATTAGGGAGTTAGTTGATCCCTCGCTAGACCTAGTCCACGAATTCGAATGTGGGCAGATTAATGTGGTGCTTTTGGCAGCATCTCTATGCATACGAAAGTCCTCAATTCGTCGCCCCACTGCGAGACAGGCATGA 1119 0.4459 MKEKVDSPVGVLEEYFQSSESETSCSNSKEEKSKGKGKGGSRWRGFVQLLRSTSKKPIDTLHPLGVLMLSKRRSSSKRETTLPNSNSSLHRPPWRIFTHHDIQMATNHFSHKKLIGKGGYAQVYEGRLPNGEVVAIKRLTRGTQDEMIADFLTELGIMAHVNHPNTAKLVGYGVEGGMYLVLQLSQKGSLASLLYGSKEKLAWCVRHKIALGTAKGILYLHEGCHKRIIHRDIKAANILLTDDFEPQICDFGLAKWLPQSWTHHTVSKFEGTFGYLAPEYLLHGIVDEKTDVFALGVLLLELVTGRRALDYSQQSLVLWAKPLLKKNDIRELVDPSLDLVHEFECGQINVVLLAASLCIRKSSIRRPTARQA 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3566 372 SUPERFAMILY Protein kinase-like (PK-like) 83 372 IPR011009 -
Sto13g3566 372 MobiDBLite consensus disorder prediction 70 90 - -
Sto13g3566 372 Gene3D Transferase(Phosphotransferase) domain 1 186 372 - -
Sto13g3566 372 ProSitePatterns Protein kinases ATP-binding region signature. 115 137 IPR017441 GO:0005524
Sto13g3566 372 SMART serkin_6 109 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g3566 372 MobiDBLite consensus disorder prediction 18 42 - -
Sto13g3566 372 Pfam Protein kinase domain 110 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g3566 372 ProSiteProfiles Protein kinase domain profile. 109 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g3566 372 PANTHER PROTEIN KINASE FAMILY PROTEIN 1 371 - -
Sto13g3566 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Sto13g3566 372 PANTHER OS08G0249100 PROTEIN 1 371 - -
Sto13g3566 372 Gene3D Phosphorylase Kinase; domain 1 80 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3566 Sto-Chr13 38228984 38230497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3566 96 371 Trihelix Transcription Factor Family AT1G68690 40.351 1.88e-61 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Sto13g3566 Pkinase 4.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3566 - - gmx:100818913 538.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0555 8 3411465 3413201 Sto13g3566 13 38228984 38230497 CCT
Sto13g3566 13 38228984 38230497 Sto13g3923 13 40314187 40315826 ECH
Sto13g3566 13 38228984 38230497 Sto13g3566 13 38228984 38230497 ECH
Sto8g0555 8 3411465 3413201 Sto13g3566 13 38228984 38230497 ECH
Sto3g0269 3 1804770 1808259 Sto13g3566 13 38228984 38230497 ECH