Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3552 ATGGCTTCGGTTGTCCTCAGAAATTCAGCGTCTAGGCGTCTCTTTCCTACTTCTCAAATTTACTGGTACTCTCGAGGCTCACTCACCGCTCATTCACAGCTTTCTGAGTTGGTTTATGGAAATGAGACTAAGTCTGCTTCGAATCCATGGTGGAGATCCATGGCCACTTTCACTCGAACAAAACCTCATGTTAATGTGGGGACTATTGGGCATGTTGACCACGGGAAGACCACACTCACTGCAGCAATTACCAAGGTGCTAGCTGAAGAAGGAAAAGCTAAGGCTGTAGCCTTTGATGAAATTGACAAAGCTcctgaagagaagaagagaggaatcaCAATTGCAACGGCCCATGTTGAGTATGAGACAGCTAAACGACACTATGCACATGTAGACTGCCCTGGACATGCAGACTATGTTAAAAATATGATTACAGGAGCTGCCCAAATGGATGGCGGTATTCTTGTTGTATCTGCACCTGATGGACCTATGCCTCAAACCAAGGAGCACATTCTTCTTGCACGCCAAGTTGGTGTGCCATCTCTAGTGTGCTTTTTAAATAAAGTTGATGCTGTTGATGATCCAGAATTGTTAGAGCTTGTAGAAATGGAACTTCGTGAGCTACTTAGTTTCTACAAGTTCCCTGGGGATGATATCCCTATCATCAGAGGTTCAGCATTGTCTGCTCTACAGGGTACAAATGATGAGATTGGTAGAAAAGCCATTCTTAAATTAATGGATGCTGTGGATGAATATATTCCTGATCCTGTTCGCCAGCTTGACAAGCCTTTCCTAATGCCTATTGAAGATGTATTCTCTATTCAGggACGTGGAACAGTAGCCACTGGCCGCGTTGAACAAGGAACCATAAAAGTTGGCGAGGAAGTTGAGATTTTGGGTCTAATGCAGggtGGTCCTCTGAAAACAACAGTAACTGGCGTTGAGATGTTCAAAAAGATATTGGATCAGGGACAAGCTGGTGACAATGTTGGTCTTCTTCTACGTGGTCTGAAAAGAGAAGACATTCAACGTGGTCAGGTAATTGCTAAGCCTGGTTCTCTAAAAACATACAAAAAGTTTGAGGCAGAAATATATGTACTCACAAAGGATGAAGGTGGCCGACACACTGCCTTCTTCTCCAACTATAGACCTCAGTTTTACATGAGAACTGCTGATATCACTGGAAAAGTAGAATTGCCTGAAAATGTGAAGATGGTTATGCCTGGAGATAATGTTACTGCCGTATTTGAGTTAATTTCCGCTGTTCCACTTGAAGCAGGACAAAGATTTGCCTTGAGAGAAGGAGGCAGAACGGTTGGTGCAGGTGTGGTGTCAAAAGTAATGAGCTAA 1350 0.4252 MASVVLRNSASRRLFPTSQIYWYSRGSLTAHSQLSELVYGNETKSASNPWWRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDDIPIIRGSALSALQGTNDEIGRKAILKLMDAVDEYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEILGLMQGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDIQRGQVIAKPGSLKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQFYMRTADITGKVELPENVKMVMPGDNVTAVFELISAVPLEAGQRFALREGGRTVGAGVVSKVMS 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3552 449 Pfam Elongation factor Tu domain 2 278 348 IPR004161 GO:0005525
Sto13g3552 449 Gene3D Translation factors 393 448 - -
Sto13g3552 449 Hamap Elongation factor Tu [tuf]. 52 449 IPR004541 GO:0003746|GO:0005525|GO:0006414
Sto13g3552 449 Gene3D - 53 256 IPR027417 -
Sto13g3552 449 SUPERFAMILY Translation proteins 258 354 IPR009000 -
Sto13g3552 449 Gene3D Translation factors 259 389 - -
Sto13g3552 449 PANTHER ELONGATION FACTOR TU 23 449 - -
Sto13g3552 449 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 102 117 IPR031157 -
Sto13g3552 449 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 61 257 IPR000795 GO:0003924|GO:0005525
Sto13g3552 449 TIGRFAM EF-Tu: translation elongation factor Tu 53 448 IPR004541 GO:0003746|GO:0005525|GO:0006414
Sto13g3552 449 CDD EFTU_III 355 444 - -
Sto13g3552 449 Pfam Elongation factor Tu C-terminal domain 354 447 IPR004160 -
Sto13g3552 449 CDD EF_Tu 62 256 IPR041709 -
Sto13g3552 449 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 358 448 IPR009001 -
Sto13g3552 449 Pfam Elongation factor Tu GTP binding domain 61 254 IPR000795 GO:0003924|GO:0005525
Sto13g3552 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 279 IPR027417 -
Sto13g3552 449 CDD EFTU_II 264 352 IPR033720 -
Sto13g3552 449 PRINTS GTP-binding elongation factor signature 65 78 IPR000795 GO:0003924|GO:0005525
Sto13g3552 449 PRINTS GTP-binding elongation factor signature 109 117 IPR000795 GO:0003924|GO:0005525
Sto13g3552 449 PRINTS GTP-binding elongation factor signature 129 139 IPR000795 GO:0003924|GO:0005525
Sto13g3552 449 PRINTS GTP-binding elongation factor signature 145 156 IPR000795 GO:0003924|GO:0005525
Sto13g3552 449 PRINTS GTP-binding elongation factor signature 182 191 IPR000795 GO:0003924|GO:0005525
Sto13g3552 449 PANTHER ELONGATION FACTOR TU-RELATED 23 449 - -
Sto13g3552 449 TIGRFAM small_GTP: small GTP-binding protein domain 64 200 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3552 Sto-Chr13 38149165 38153985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3552 59 447 Eukaryotic Initiation Factors Gene Family AT5G60390 30.822 1.64e-45 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3552 K02358 - csin:114270153 789.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3552 13 38149165 38153985 Sto13g3552 13 38149165 38153985 ECH