Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3540 ATGAGCATATCTGTGGCAATGAGTAGAATAACAGAGCCACAAATTAATAGTGCTTCTCCTTCCAGTGGTCGAAAATTCAATCTTCCTCGGCAGAAAGAGAAAGTAGTGGTGGTGATGGGAGCCACCGGCACCGGAAAGTCCAGGCTCTCCATCGACCTGGCCACCCTATTTGCTGCAGAAATCATCAACTCCGACAAAATGCAAGTTTACCAAGGCCTTGACATAGTCACAAACAAAATCACCAAGGAAGAGCAACGTGGGGTGCCTCACCATTTGCTAGCAACACACAACCCCAACTCAGAGTTCACAGCCACCGACTTCTGTGAATCCGCATCACTTGCAATCCAATCAATTAGGAGTCGTGACCAGCTTCCCATCATCGTCGGAGGCTCCAACTCCTACATCGAGGCACTAATCGACGACGATGATTATAAATTCCGTTCGCGGTATGATTTGTGTTGCCTCTGGGTAGACGTGTCAATGCCTGTTCTTCATACATATGTGGGGGAACGGGTGGATGAGATGTTAGAGAACGGAATGGTGAATGAGGTGAGAGCGTTTTTCAATCCCAAGGGAGACTACTCGCGAGGGATTAGGAAAGCTATTGGGGTGCCTGAATTCGATGAATACTTTCGGAAGGAATGGTTAATTGGAGATGAAGAAAGGAGGGAGAGGTTAGTGAGAGAAGCGGTGAGGCAGGTGAAGGAGAATACGTGCAAATTGGCGCGTAGACAATTGGGGAAGATTCAGAGGCTGAGGAATGTGAAGAGATGGAAGATACATCGCATAGATGCGACGCCTGTGTTTCGAAAGCGTGGGGAAGAAGCAGATGAGGCATGGAAGAAGATGGTGGCAGATCCAAGTGCCATGATCGTCGCCAAGTTTCTTTACAATTTCAGCACACCCaatgttggtggtggtgggctTAGACTATCATCCTCAGCCCTCCAAAGCGCCATCGCTACGGTTACGTGCTGA 978 0.4755 MSISVAMSRITEPQINSASPSSGRKFNLPRQKEKVVVVMGATGTGKSRLSIDLATLFAAEIINSDKMQVYQGLDIVTNKITKEEQRGVPHHLLATHNPNSEFTATDFCESASLAIQSIRSRDQLPIIVGGSNSYIEALIDDDDYKFRSRYDLCCLWVDVSMPVLHTYVGERVDEMLENGMVNEVRAFFNPKGDYSRGIRKAIGVPEFDEYFRKEWLIGDEERRERLVREAVRQVKENTCKLARRQLGKIQRLRNVKRWKIHRIDATPVFRKRGEEADEAWKKMVADPSAMIVAKFLYNFSTPNVGGGGLRLSSSALQSAIATVTC 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3540 325 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 25 302 IPR039657 -
Sto13g3540 325 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 161 260 - -
Sto13g3540 325 Hamap tRNA dimethylallyltransferase [miaA]. 35 285 IPR018022 GO:0008033
Sto13g3540 325 Pfam IPP transferase 68 141 - -
Sto13g3540 325 Pfam IPP transferase 146 246 - -
Sto13g3540 325 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 143 IPR027417 -
Sto13g3540 325 Gene3D - 32 296 IPR027417 -
Sto13g3540 325 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 25 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3540 Sto-Chr13 38088097 38089074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3540 148 296 C2H2 Transcription Factor Family AT2G27760 34.286 8.65e-21 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3540 K10760 - gmx:100803964 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0581 8 3560887 3562950 Sto13g3540 13 38088097 38089074 CCT
Sto13g3540 13 38088097 38089074 Sto13g3540 13 38088097 38089074 ECH