Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3532 ATGGAGGTGAGTGCGGAGGAGGCGTCTCTCCAGAGAAGCCAACAACTGAAAGAACTCTATGAATCTTTGTCTGCCGGAGACACCAACCCACCCACACGACGCCCTTGCGCCGCCTTGTCCCCGGAGGACCTCACTGAATCCGAATGGTTCTATTTGATGTGTGTCTCTTTCTCATTTCCTCCTGGTGTCGGGTTGCCGGGAAAGGCATATGCGAGGAGGCAGCATGTATGGCTTGCTGGTGCAAACGAGGTGGACAGTAAAACATTTACTAGAGCTATTCTAGCCAAGACTGTGGTGTGCATTCCTCTGTTGGACGGCGTCGTAGAATTTGGCACAACAGATAAGGTGCAAGAAGACCTTAACTTTATCCAACATGTGAAGAGCTTCTTCACAGACAACCAGCAGCATCGCCACCCTCCGCCGCCAAAGCCTGCCCTCTCCGAACACTCCACCTCGAATCCCACGTCCTCTTCCGCGCCCCTCCCGGCCGCCATGTACTCTGCCGCGGACCCCCCACCCGCCACTCCGGCTCCCAACAACGTCCACATGGACGAAGATGACGAGGCAGATTCGGATTCCGAAACCCGGAACAGCGGCCCCATGGCCACGGCGGACGCATGTGGCGTGGCGGTGGTGACGGCAGCGGCGGAGCCTAGTGAGCTAATGCAGCTGGAGATGTCGGAGGATATCCGGGTGGGATCACCGGATGATGGATCCAACAACCTTGACTCTGACTTCCATCTGCTGGCGGTGAGCCAGAGAGAGAACCTAACGGCCGAAACGGATCATGATCAGCGCCGGGCTGACTCATATCGGGCCGAATCGACCCGGAGGTGGGACGAACCGGCCCTTCAACTACCACCTGCTTCAGAAGGTGGTCCTGCTGTAGAAGAGCTGACAGAAGAAGACACCCACTACTCTCAAACGGTGTCTACCATTCTGCACAACCAGTCAATCCGTTGGGCAGAATCAGAATCAGCCTCGGTCGACTACATCACTTACTCCTCccaatcagctttcgccaagtGGCAGACGCGCGCCGATCACCTCCACGTGTCCTCCGCCGACGGCACCTCGCAGTGGCTCCTCAAGTACATTCTGTTCACCGTCCCTTTCCTTCACGCCAAGTACCAAGACGACAACTCACCCACCACCGGGGATCCTAAGCGCGGGAAAGGGACAGCGCAGGATGAGCTAAGCGCGAACCACGTGCTTGCGGAGCGGCGGCGGCGCGAGAAGCTGAACGAGAGGTTCATCATCCTGAGATCGCTGGTGCCGTTCGTGACGAAAATGGACAAGGCGTCGATATTAGGAGACACGATCGAGTACGTGAAGGAGTTGCGGAAGAAGATCCAGGATCTGGAGGCCCGAAACCGGGAGATGGAGGGGGATGAGCAGAGAGGTAGTAGTGTGGGGtgggagaagaggaagacgcGGATTGTGGAGGAGAGCGGTGGAGTGAGGAAGGCGAAGACGGTGGGAATGGTGACGTCAGTGCAGGTTTCGATCATAGAGAGCGATGCGCTGTTGGAGCTGGAGTGCGTGAACAGGGAAGGGTTGTTACTGGATGTGATGCAAATGCTGCGAGAGATGCGGATAGAGGTCACCACGGTCCAGTCCTCGCACAACAATGGGATGTTCGTGGCGGAGTTGAGGGCCAAGGTCAAAGATAACGCAACCGGCAAGAAGGCCAGCATTGTGGAATTTGTGGCTGCACTCTGGGGCAAGAATACACCGGTTCCACATGATCTCTCCCCAGATTCTAAGAAAATTGCTTGCATTCCAGGTCCACCATTTCCTAGTTTTGGTCTTTTTTGgagagaagaagagaaagggaATAAGGGCTGGATTGAAAATATTGATGGAATTAATGGAGCTGCAATACCTGTTGTGACACCAGTTCTCTGTGACCAAGATGCTGATAATTTTGATGGCGGTGACTCGTACATGCCTAGAGCAACATGA 1965 0.5379 MEVSAEEASLQRSQQLKELYESLSAGDTNPPTRRPCAALSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYARRQHVWLAGANEVDSKTFTRAILAKTVVCIPLLDGVVEFGTTDKVQEDLNFIQHVKSFFTDNQQHRHPPPPKPALSEHSTSNPTSSSAPLPAAMYSAADPPPATPAPNNVHMDEDDEADSDSETRNSGPMATADACGVAVVTAAAEPSELMQLEMSEDIRVGSPDDGSNNLDSDFHLLAVSQRENLTAETDHDQRRADSYRAESTRRWDEPALQLPPASEGGPAVEELTEEDTHYSQTVSTILHNQSIRWAESESASVDYITYSSQSAFAKWQTRADHLHVSSADGTSQWLLKYILFTVPFLHAKYQDDNSPTTGDPKRGKGTAQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKELRKKIQDLEARNREMEGDEQRGSSVGWEKRKTRIVEESGGVRKAKTVGMVTSVQVSIIESDALLELECVNREGLLLDVMQMLREMRIEVTTVQSSHNNGMFVAELRAKVKDNATGKKASIVEFVAALWGKNTPVPHDLSPDSKKIACIPGPPFPSFGLFWREEEKGNKGWIENIDGINGAAIPVVTPVLCDQDADNFDGGDSYMPRAT 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3532 654 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 400 463 IPR036638 GO:0046983
Sto13g3532 654 PANTHER TRANSCRIPTION FACTOR TT8 1 572 - -
Sto13g3532 654 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 130 IPR025610 -
Sto13g3532 654 Gene3D - 398 469 IPR036638 GO:0046983
Sto13g3532 654 MobiDBLite consensus disorder prediction 383 398 - -
Sto13g3532 654 MobiDBLite consensus disorder prediction 148 162 - -
Sto13g3532 654 Coils Coil 437 464 - -
Sto13g3532 654 MobiDBLite consensus disorder prediction 132 203 - -
Sto13g3532 654 PANTHER TRANSCRIPTION FACTOR TT8 1 572 - -
Sto13g3532 654 Gene3D - 507 566 - -
Sto13g3532 654 MobiDBLite consensus disorder prediction 257 279 - -
Sto13g3532 654 MobiDBLite consensus disorder prediction 255 295 - -
Sto13g3532 654 SMART finulus 404 453 IPR011598 GO:0046983
Sto13g3532 654 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 398 447 IPR011598 GO:0046983
Sto13g3532 654 MobiDBLite consensus disorder prediction 378 398 - -
Sto13g3532 654 Pfam Helix-loop-helix DNA-binding domain 401 447 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3532 Sto-Chr13 38033603 38041190 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3532 2 568 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 30.343 5.60e-69 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto13g3532 bHLH-MYC_N 1.6e-30 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3532 - - zju:107426439 716.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3532 13 38033603 38041190 Sto13g3532 13 38033603 38041190 ECH