Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3518 ATGAGGGAGGGGCTTAGATCTCAGAAGCGACTGGAGAGGCCGGAGGAAGACAATGTTTCTAGAAGGCTAGTAGTTCAAAAGAAAGGGCATGCCGTCAAGCAAGAGATTACTGATTTTATTGCTGAAGATTCAGCGCAGAAGAAAGAAGCATTAGACTTGGCAGATTCGAAGCAGGAGGTAGAGGGAGTAGCAATAGAAGAATGCGTATTGAATGGGGATATGGGCAAGAGTACAACTGACGGGTTGATTAAAAATGTTAACAATAGTACGGTTTTAAGTTGTGAGGATAACAATGAGAGGAAGGTGAAGAAGGAAGAGGGCTCAAATGATAAAGTGCAAATTGGTGGTCGAGTATTACGCTCACAGTTAAAGAGGGCAGATGGTAAGAAATCTGGTGATGAAGAGAACAGTGTTGTGCTGGTCAGGGAAAGAGAGCATGGTGGGATTGAGAGGTTACAGGTTAAGGCAGAAGAGGTAGAGGCTGATGAAAATGTTAGTAATGGTTCTGAGAAGACGAGAGTTAAGGAGAGTATGGAAGGCAATGTCCAAAGAAAGTTGAAACGGAAGCGTGGAAGGCCCCCCAAAATGGAGGTGAAAAGGCAGGATGGCCAGCTGCAACGGAAGCGAGGAAGGCCACCCAAGGCTGGGAAAAATGATGGGCACATGAAATTGCCACATAGTAAAAATGGAAAGTTGGGCTTTcagaaaagtaaaaaatgtttaactgTGAGACATGGCATTAATACAAATTCAATTGATATGTGCTCAAAAACAAGATCTTCTGCGAATAAGTTAAAAAACAAGGTTTTTACTCCTGTCAAAACTGAGAACAGTGAGATAGCATCACCACTGACATCAAATTCTTTAAATGTGCCTGTTTCTGAGAAAAATAGAAAGAGTAAAGCAAAGCAGGTAGTGAGGGACCGGATAATGGATCAGCTCTCAGCTGCAGGCTGGAGTGTTGACTATAGACCAAGGAATGGCAGAATGTACAATGATGCAGTGTATGTTAGTCTAGATGGAAAAACCCACTGGTCAATTACCTTGGCCTACAAGAGGCTTAAGGAGCATTATGAAAATGGCGATGGTGAAGGTAAGGTGTATGGGCCAGGTTTTAAACTTACACCTATACCAGAAGAGGATTTCAATATCTTAACTAAGGTAATGACCAAGACAAGAGAAGACAAAGGTGGAAATAGAGTTAAGGGAGtcaataaaaaagtgaaaaaagaaaaacaaggaTCCATTGCTGTGGGTAAATCAACGAAGGGAAAAATGAAGAGGAAATGGTCACTTATCGAGGAGGATAATTTTGATGTTCCATCGCATAACAGGATGACAGTTCTGGTGAAGGATCATAAGCGACAGAAAACACGAAACAAAAAGCGATGTGCTTTGTTGGTTCGCGATGTTGAGAAAGAGATAGATTCAGAACTTGATGGGTATGTACCTTACAATGGGAAACGAACTGTGTTTGCTTGGATGATTGATTTGGGAACAGTTTTGCAAAATGGGAAGGTTCATCATGTAGACCACAGAAGGGAAGGTGCAGTGTTGGAGGGTAGGATTACAAGAGATGGCATTCATTGTGGTTGCTGTGATCAAACCGTCACAACTTCAGAGTTTCAAGCTCATGCAGGAAGTGAACTCTCTGATCCATTTAGAAATATTTGTGTAGAGGGAGGAACAACTCTCTTGCAATGCCTGCTAGACTCATGGAATAAACAAGAAGAATCTGAACGGGAAGGTTTTCATTTTGTTGATGTTGCTGGTGAAGACCCTAATGATGATACATGTGGTGTCTGTGGAGATGGTGGAGATCTGATCTGTTGTGATGGTTGTCCATCAACATTCCATCAAAGCTGCTTGGGTATAAAAGTTCATCGGGCATCAGTATGCTCAATGCATCCGAGAGATATaAGTTTCCATTTGGTGATTGGCACTGCATTTATTGCTGTTGCAGATTTTGTGGTCTGGTTGGAAGTAAAAACCAAAGGGATGACCATGGTGATACTGCTGAGTCTGCATTACTTACGTGCCATTTATCACAAATCTTGTATTGAGGTGGGTGGTACTCAAGTTGATGACTCCAGTGATACATTTTGTGGACCCATGTGTCAGCAGTTATATGAGAGACTCAAAATGATTCTTGGAGTCAAACATGAAATTGGAGATGGATTTTCTTGGACTTTTATTCACCGGTCAGATGTTGGTTCAGATGCTTCTCAGATAAAATCTCAGATGGTTGAATGTAATTCCAAGTTAGCTGTGGCATTATTGATAATGGATGAGTGCTTCATGCCTTACATTGATCATAGAAGTGGGGTTAATCTGATTCACAGTATTCTTTATAATTGTGGGTCAAACTTCAACCGCCTGAACCATAGTGGATTCATCACTGCCATTCTAGAGAGAGGAGATGAAATTATCTGTGCTGCATCTATTAGGATCCATGGGAACCAACTAGCAGAGATGCCATTTATTGGGACTCGCTCCATGTATAGGCGACAAGGAATGTGCCGCCGGCTTCTGAGTGCTATTGAATGTGCACTCAGCTCTCTGAATGTTGGGTTATTGGTAATACCAGCTATTGCAGAACTGAGAGAAACTTGGACATCAGTTTTTGGGTTTGAGCCACTTGATATGAAgagcaataaaaaaataaagaacatGAATCTGTTGGTATTTCCTCATGTAGATATGTTACAGAAAAAGATACCAAAGCCTTATTCTGCTGATGAAAATCTGATACCTACAGAAGTTTCCAGTCCTCAATTTCAGAAGAATCAGAAAATGGACGAGGTGGCAAATAATTGCTATGAGATGGCCTCATCTGCATCTCTTATTGATAGTGAGACTGTGCACCACAAAGGTGCCATAGAAAGCCCTGATCATATGATCAATACAAATCACCAAGATGAGCATGTAAAAACGTGTCAGGATACTGATATCATCCTGGCCCATAACGGGGAGTCAGTAGATTTAGATAACCAAGTGAACCATGAGGAGGGAAAGAAATTTCTCGCAGTATCAGATGATGTAGTTATGGATAGCAACATTGCTGAGGATTCTCCACACCACCTGTCAAAAAGTATTCCTCTTGGATCAGAGACTGTGTCTTCTACAAGGGAAATGAAAGATTCTTACGGAGATTCAAATAATATAATCCCATTTAAGGATGATGCGGGGACTTTGCACCATGATTCTCAGAAATTCCAGGTTGCAGAATGTGAACAGATCCGCAATCATGACTATGTTCAGCCCCACACTATAGGATCAGAAGATTTGCATTCTGAATCTATCAATGGTCGTGGTTCTCAGTGTAAACTCAGTGGAGTTTGTGTGTCCGGTGATACACAGAGCTTCACTGAAGATTTACCTGATAATTGCATAAAACCTACCAGTGCGGTTAGTGCACTAAATGCTGATGAAGCAGAAGTCTCAGCGGCCAAGACACCTAATCTCCAGACTCACATAAGTTCTGGAGATTGCCAATCCATACAAATGGCTTCAGGTTCTTGTGAGGAGATTCCAAATGGTGCACATAAGAGCGGTAAAGCATCTTGTGTAGCGGAGTTTGATTTTCTTCCAGCTGATAGGAACGCAGTTATCAATAATAACCCTTGGATGGATCCCCATTCGGACCTACCACAGCCTGCTTTACCGGTTGATAAAGCTGCACTGGGTAATGGTCCTTCCTTGTGTAGCCCAAATGCTGCTGGCGTGGCTCTTCACTGTGCATCTTCCGGTGGTGCTTCATGTGGTGGTACTGAGTCTAGAAGGTCACAGGTAGGCTATTCTGTTGTAGTTGTAGATAATCGTATCTCAAGAAGAGAGATGTACTTGTTAGAGAAGATAGAGCAGAAGCTCCTCCAACATTTCCCAATTGTGCTTGACATCCCTCAGCTCGGGACGCGCCTCCACCATCTCCTGCATGGACCGCCGGAAGTCCGTGAAAGGGTCCGGCGAGTAGGTGGCCACCGCCACGCTGTCACTGAAGAGCAGCCGCCTGCGTACAGGGACGATGGAGTTGGAGTGGCCAGGGGACGAGAAGAAGAACCGTTCCGAGGCGAAGGCAGTCGCCAGCATTTATTTTCATTCAATGCATATGCAGCTGCAGCTGCAGCTGCCTGCCGTGTACctatgtag 4149 0.4254 MREGLRSQKRLERPEEDNVSRRLVVQKKGHAVKQEITDFIAEDSAQKKEALDLADSKQEVEGVAIEECVLNGDMGKSTTDGLIKNVNNSTVLSCEDNNERKVKKEEGSNDKVQIGGRVLRSQLKRADGKKSGDEENSVVLVREREHGGIERLQVKAEEVEADENVSNGSEKTRVKESMEGNVQRKLKRKRGRPPKMEVKRQDGQLQRKRGRPPKAGKNDGHMKLPHSKNGKLGFQKSKKCLTVRHGINTNSIDMCSKTRSSANKLKNKVFTPVKTENSEIASPLTSNSLNVPVSEKNRKSKAKQVVRDRIMDQLSAAGWSVDYRPRNGRMYNDAVYVSLDGKTHWSITLAYKRLKEHYENGDGEGKVYGPGFKLTPIPEEDFNILTKVMTKTREDKGGNRVKGVNKKVKKEKQGSIAVGKSTKGKMKRKWSLIEEDNFDVPSHNRMTVLVKDHKRQKTRNKKRCALLVRDVEKEIDSELDGYVPYNGKRTVFAWMIDLGTVLQNGKVHHVDHRREGAVLEGRITRDGIHCGCCDQTVTTSEFQAHAGSELSDPFRNICVEGGTTLLQCLLDSWNKQEESEREGFHFVDVAGEDPNDDTCGVCGDGGDLICCDGCPSTFHQSCLGIKVHRASVCSMHPRDISFHLVIGTAFIAVADFVVWLEVKTKGMTMVILLSLHYLRAIYHKSCIEVGGTQVDDSSDTFCGPMCQQLYERLKMILGVKHEIGDGFSWTFIHRSDVGSDASQIKSQMVECNSKLAVALLIMDECFMPYIDHRSGVNLIHSILYNCGSNFNRLNHSGFITAILERGDEIICAASIRIHGNQLAEMPFIGTRSMYRRQGMCRRLLSAIECALSSLNVGLLVIPAIAELRETWTSVFGFEPLDMKSNKKIKNMNLLVFPHVDMLQKKIPKPYSADENLIPTEVSSPQFQKNQKMDEVANNCYEMASSASLIDSETVHHKGAIESPDHMINTNHQDEHVKTCQDTDIILAHNGESVDLDNQVNHEEGKKFLAVSDDVVMDSNIAEDSPHHLSKSIPLGSETVSSTREMKDSYGDSNNIIPFKDDAGTLHHDSQKFQVAECEQIRNHDYVQPHTIGSEDLHSESINGRGSQCKLSGVCVSGDTQSFTEDLPDNCIKPTSAVSALNADEAEVSAAKTPNLQTHISSGDCQSIQMASGSCEEIPNGAHKSGKASCVAEFDFLPADRNAVINNNPWMDPHSDLPQPALPVDKAALGNGPSLCSPNAAGVALHCASSGGASCGGTESRRSQVGYSVVVVDNRISRREMYLLEKIEQKLLQHFPIVLDIPQLGTRLHHLLHGPPEVRERVRRVGGHRHAVTEEQPPAYRDDGVGVARGREEEPFRGEGSRQHLFSFNAYAAAAAAACRVPM 1382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3518 1382 SMART PHD_3 598 637 IPR001965 -
Sto13g3518 1382 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 29 626 - -
Sto13g3518 1382 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 668 1091 - -
Sto13g3518 1382 MobiDBLite consensus disorder prediction 158 232 - -
Sto13g3518 1382 PANTHER PHD FINGER PROTEIN 12 29 626 IPR042163 GO:0003714|GO:0045892
Sto13g3518 1382 PANTHER PHD FINGER PROTEIN 12 668 1091 IPR042163 GO:0003714|GO:0045892
Sto13g3518 1382 SMART AT_hook_2 187 199 IPR017956 GO:0003677
Sto13g3518 1382 SMART AT_hook_2 206 218 IPR017956 GO:0003677
Sto13g3518 1382 MobiDBLite consensus disorder prediction 195 226 - -
Sto13g3518 1382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 588 643 IPR013083 -
Sto13g3518 1382 MobiDBLite consensus disorder prediction 158 184 - -
Sto13g3518 1382 MobiDBLite consensus disorder prediction 1 26 - -
Sto13g3518 1382 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 757 906 IPR000182 GO:0016407
Sto13g3518 1382 Pfam Tify domain binding domain 521 570 IPR032308 -
Sto13g3518 1382 MobiDBLite consensus disorder prediction 394 414 - -
Sto13g3518 1382 SUPERFAMILY FYVE/PHD zinc finger 591 628 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3518 Sto-Chr13 37920040 37930985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3518 56 924 PHD Transcription Factor Family AT5G36670 37.844 1.05e-174 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3518 - - lang:109346644 1082.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0615 8 3787535 3796318 Sto13g3518 13 37920040 37930985 CCT
Sto13g3518 13 37920040 37930985 Sto13g3518 13 37920040 37930985 ECH