Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3492 ATGGAAGCGTCTTCATCTCAATCAGGAGGTGAAGCGTCGACGACGATTCCGCCTCCGCAGCCAATGGAGGGGCTTCATGAGATAGGCCCACCACCATTCCTGACGAAGACGTTCGATGTGGTGGACGACCCAACCACCAATTACATAGTCTCCTGGAGCAGAGCAGGTTTTAGCTTTGTCGTTTGGGATCCACACGCTTTCTCCACCACTCTCCTTCCTAGATACTTCAAACACAACAATTTCTCAAGCTTTGTCAGGCAATTAAACACCTATGGATTTAGAAAAATTGACCCAGATAGATGGGAGTTTGCTAATGAAGGATTCTTGAGAGGGCACAGGCATCTTCTGAGGAACATAAGGAGAAGGAAGGCACCTTCTAATCCTGCCCTTTCGCAACAAGCGCAACAAGGGCATTGTGTTGAAGTAGGAAGGTTCGGACTTGACGAAGAAATTGACCGTTTAAGGCGAGACAAGCAAGTGCTGATGATGGAGCTGGTGAAGCTTAGGCAGCAGCAACAGAACACTAGAGCATACCTCCAGGCAATGGAGCAAAGGTTACAAGGCACAGAAGTGAAGCAGCAACAAATGATGGCTTTCTTAGCCAGAGCCATGAAAAATCCAGCCTTTATACACCAACTACTCCAACAGAAAGACAAGAGAAAGGAGCTTGAAGAAGCCATAACCAAGAAGAGAAGAAGGCCAATCGAGCAAGGGCCAAGGACTGGTGATAATAGTAGAGGAAAGAACCCCGTGAAAGATGAGCCTTTGGAAATTAGGGACTACGGGTTTCAAGTGTCAGAGCTGGAAGTGCTGGCTATGGAAATGCAGGGTTATGGTAGGGGAAGAAGAGAATGGGAGGCCACAGAACCACAGGAGAGGCTAGACAAAGAACTTGATGAGGGTTTCTGGGAAGAACTGTTTAGTGAAAATTTTGAGGGTGAAATAGACATTCCAAGCACGGaatatgaagatgaagatgaagatgtcAATGTCTTAGCTAATCGCTTGGGCTACTTGGGTTCTAGTCCCAAGTATACCACTAAATGA 1047 0.4585 MEASSSQSGGEASTTIPPPQPMEGLHEIGPPPFLTKTFDVVDDPTTNYIVSWSRAGFSFVVWDPHAFSTTLLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFLRGHRHLLRNIRRRKAPSNPALSQQAQQGHCVEVGRFGLDEEIDRLRRDKQVLMMELVKLRQQQQNTRAYLQAMEQRLQGTEVKQQQMMAFLARAMKNPAFIHQLLQQKDKRKELEEAITKKRRRPIEQGPRTGDNSRGKNPVKDEPLEIRDYGFQVSELEVLAMEMQGYGRGRREWEATEPQERLDKELDEGFWEELFSENFEGEIDIPSTEYEDEDEDVNVLANRLGYLGSSPKYTTK 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3492 348 SUPERFAMILY "Winged helix" DNA-binding domain 29 122 IPR036390 -
Sto13g3492 348 MobiDBLite consensus disorder prediction 1 15 - -
Sto13g3492 348 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 4 332 - -
Sto13g3492 348 MobiDBLite consensus disorder prediction 1 28 - -
Sto13g3492 348 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 4 332 IPR027725 -
Sto13g3492 348 MobiDBLite consensus disorder prediction 227 255 - -
Sto13g3492 348 PRINTS Heat shock factor (HSF) domain signature 33 56 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto13g3492 348 PRINTS Heat shock factor (HSF) domain signature 71 83 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto13g3492 348 PRINTS Heat shock factor (HSF) domain signature 84 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto13g3492 348 Gene3D - 26 123 IPR036388 -
Sto13g3492 348 Coils Coil 151 185 - -
Sto13g3492 348 Coils Coil 213 233 - -
Sto13g3492 348 Pfam HSF-type DNA-binding 33 122 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto13g3492 348 SMART hsfneu3 29 122 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto13g3492 348 ProSitePatterns HSF-type DNA-binding domain signature. 72 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3492 Sto-Chr13 37809166 37810816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3492 14 342 HSF AT3G22830 55.556 1.74e-132 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Sto13g3492 HSF_DNA-bind 1.8e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3492 K09419 - gmx:100794264 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0644 8 3961291 3962743 Sto13g3492 13 37809166 37810816 CCT