Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3491 ATGTCCAATTCCACTTGTTTGTCCCAAGAATTAgccactactactactactactgtcTCTTCTGCTGCCAAAACACTTCACAACTTGGCTGCATCATTAAACCATGTCGTTTCAACTTCAACTAccattcctcctcctcctcaaaAGATCAAGAAAAAGAGAAACCTCCCTGGCAACCCAGACCCAGATGCAGAAGTGATAGCGTTATCCCCAAAGAGTCTTCTGGCGACCAACAGATTTGTGTGTGAGGTGTGCAATAAGGGTTTCCAGAGAGAGCAGAACCTGCAGCTTCATAGGAGAGGGCACAACCTTCCATGGAAGCTGAAGCAAAGGAAGAGCAAAGAGGTGAGAAAGAGAGCGTACGTTTGCCCTGAGCCTTCATGCGTCCACCACAACCCCTCAAGGGCTCTTGGAGATCTCACAGGAATTAAGAAGCATTACTGTAGAAAACATGGGGAGAAGAAGTGGAAGTGTCACAAGTGCTCCAAATTCTACGCTGTTCACTCTGATTGGAGAGCCCACTCCAAAACCTGTGGAACCAGAGAATATAGATGTGATTGTGGAACCCTTTTCTCTAGGAAAGACAGTTTCATAACTCACAGAGCATTCTGCGATGCACTGGCTGAAGAAAGTGGTAGAATAGTGACAGCAAAGCAATTCGAAATAGGGAGCACAACAAACCCACTCCTCCAGCTCCAAATCCAATCTCTCATGGGCATGCCATTCCAAAATCAGATATATGTGAACCCGTGGGACCCACGTCAAGatgaaaaccctaaccctagctTTCAGTCTCATCAGTCGTCATCATGGCTTCAAGACCAGCCGCTGCAGCAGCAGCACAAGAGTGAACTCCACAGCGCCACAGCTGCACTGCTCCAAAAGGCTGCAACTGCAATGCCCGCGGGCCCAGGTGGTGGTGCTGTTGGGCCACACTCGACAATGGGTCACGTGGCCCAGACTCAGCCCAGCATGGCCGAGTTTGTACTGGGTGAGCacgagatgatgatgatgagtggGAATCTTAAGAGTGAAGGGCTGACAAGAGACTTCCTGGGTCTCACCGGCGATTCTGACGTTAGCGTGAACGCGGGggatatgcatatgcatatgcTGAGCATGAGCTTCACGGCCACGGGGGGCGTAGACTACTTACCAATACCATACGTTGACCACCACTCACAACAAGGTTTTGGACTCCTTGGGACTACCACTGCCCCGGAGACTTGGGGCAACGCTTGA 1242 0.4605 MSNSTCLSQELATTTTTTVSSAAKTLHNLAASLNHVVSTSTTIPPPPQKIKKKRNLPGNPDPDAEVIALSPKSLLATNRFVCEVCNKGFQREQNLQLHRRGHNLPWKLKQRKSKEVRKRAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCHKCSKFYAVHSDWRAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESGRIVTAKQFEIGSTTNPLLQLQIQSLMGMPFQNQIYVNPWDPRQDENPNPSFQSHQSSSWLQDQPLQQQHKSELHSATAALLQKAATAMPAGPGGGAVGPHSTMGHVAQTQPSMAEFVLGEHEMMMMSGNLKSEGLTRDFLGLTGDSDVSVNAGDMHMHMLSMSFTATGGVDYLPIPYVDHHSQQGFGLLGTTTAPETWGNA 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3491 413 Gene3D Classic Zinc Finger 61 128 - -
Sto13g3491 413 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Sto13g3491 413 MobiDBLite consensus disorder prediction 37 62 - -
Sto13g3491 413 Pfam Zinc-finger double-stranded RNA-binding 80 102 IPR022755 -
Sto13g3491 413 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 4 284 - -
Sto13g3491 413 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 4 284 - -
Sto13g3491 413 MobiDBLite consensus disorder prediction 248 286 - -
Sto13g3491 413 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 102 IPR013087 -
Sto13g3491 413 SUPERFAMILY beta-beta-alpha zinc fingers 79 176 IPR036236 -
Sto13g3491 413 SMART c2h2final6 121 151 IPR013087 -
Sto13g3491 413 SMART c2h2final6 156 176 IPR013087 -
Sto13g3491 413 SMART c2h2final6 80 102 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3491 Sto-Chr13 37798507 37801218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3491 15 406 IDZ Gene Family AT4G02670 49.515 1.23e-115 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto13g3491 zf-C2H2_jaz 4.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3491 K25870 - gmx:100780056 421.779