Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3460 atgttggagaagaagaagggaagtAGTGGAGAAGATGGAGGAAGCATGGTGAAGGTAAGTATGGACGGAGCACCTTATCTGCGCAAAGTGGACCTCAAGGTCTTTACCAGTTACCAACACCTCTCTGATGCTTTAGCCAACATGTTCAGTTCCTTCACCATagggaatTGTGGATCCCAAGGATTGAAGGACTTCATGAATGAGAGTAAGCTGATGGATGTTCTTAACAGCTCCGACTATGTCCCAACCTATGAGGACAAGGATGGCGATTGGATGCTTGTCGGCGACGTCCCTTGGGACATGTTTGTTGAATCTTGCAAGCGATTGCGTATTATGAAAGCAAAGGAGGCCATTGGACTTGCACCAAGAGCCATGCAGAAATGCAAGAACCGAAGCTAG 399 0.4386 MLEKKKGSSGEDGGSMVKVSMDGAPYLRKVDLKVFTSYQHLSDALANMFSSFTIGNCGSQGLKDFMNESKLMDVLNSSDYVPTYEDKDGDWMLVGDVPWDMFVESCKRLRIMKAKEAIGLAPRAMQKCKNRS 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3460 132 ProSiteProfiles PB1 domain profile. 14 116 IPR000270 GO:0005515
Sto13g3460 132 PANTHER AUXIN-INDUCED PROTEIN AUX28 6 125 - -
Sto13g3460 132 Gene3D - 9 126 - -
Sto13g3460 132 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 125 IPR003311 GO:0005634|GO:0006355
Sto13g3460 132 Pfam AUX/IAA family 5 123 IPR033389 -
Sto13g3460 132 SUPERFAMILY CAD & PB1 domains 8 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3460 Sto-Chr13 37617259 37617945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3460 1 116 B3 DNA Binding Superfamily AT3G61830 31.034 9.92e-09 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Sto13g3460 AUX_IAA 1.7e-61 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3460 K14484 - han:110910330 221.476