Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3455 ATGGCGAATCAGGTCGTGAAAGTCAAGAGGGAAGCAATTGCAGCATGCATGACCTGCCCACTCTGCAATAAGTTGTTCAGAGATGCCACCACCATATCCGAATGTCTTCATACGTTTTGCAGGAAGTGCATCTATGATAAAATTACAGACGAGGAATTAGAATGCTGTCCAATATGCAATATTGATTTAGGTTGTGTTCCACTCGAGAAATTGAGGCCAGACCACATTTTGCAAGATGTAAGGGCtaaaattttcccttttaagaaaaaaatggctAAAACACCTGAGATTGTTCCCTCAGTAACATTACCTGCTAGAAGAAAGGAGAGATCAATTTCATCTTTGGTTGTCAGCACTCCCAGAGTATCAACACAGACAACCATGACAGGGAGAAGAACAAAGCCTACAAGAAAGGCCAGTGGCTTGCGAGCCTCTGGTTTTTCCATTGAAAAGCCTATTAAAAAAGAAGCAGATTTAGTAGATGATCATCCAGAGAGTTCAAGCTCGCCTGACACATCAAACAAGATTACTCAGAATTCTGGACAGAGTTTGACGCCTCTTGAGGCTGGCCAATCCTTACGCAATAAAGAAACAGATAATGGTGCTGAGCCATGGGAAGCAAAATTGGATCTTTGGAAACCTCTAAATTGTTTAGTAGAAGTTGCAAGTAGGAGTAAATCTTTCAAGTCTAGCGTGCAAGGATCTGATGCTAAACTAGAAGCCATGCAAATAAATGAGAGTGACAATCAAGTACAAAAATCcaaaaataaggaaaataaaCGCAAGGCAAGAGTTGAGAATGAAAAAATTGACTCTGATCCTATCTCTTTGGATACAGCAAAACCTAATAAAGTGCGCAAAGTTCGCCGGAAAAAGGATCCTCTTTCTGGAGAATCAGTTGTATCACCACAAGCTGTGCTAGATGCCACCAGTGCTAAATTCAAGGAGAGAACCGGTCCAATTTGGTTCTCCTTAGTAGCTTCTGAAGACCAGGATGGAGATGAACCCTTACCGCAAATTCCTGCAAGTTATGTAAGAATAAAGGATGGAAGTGTACCTGTCTCGTTTATCCAAAAATACCTGATGAAGAAACTAGATCTGACCAGTGAAGCAGAGGTTGAGATTAAATGCATGGGACAACCAGTGGTCCCTACACTGCAACTATATAGCTTGGTTGACTTGTGGTTGCAAACAGCATCCACACCACAGAGAATTCCAGCAACGATTGGGTCGTCAGCGAAGGATTTTGTGATGGTGCTAGCCTATGCTCGCAAGGTCCCACACCCTTGA 1290 0.4132 MANQVVKVKREAIAACMTCPLCNKLFRDATTISECLHTFCRKCIYDKITDEELECCPICNIDLGCVPLEKLRPDHILQDVRAKIFPFKKKMAKTPEIVPSVTLPARRKERSISSLVVSTPRVSTQTTMTGRRTKPTRKASGLRASGFSIEKPIKKEADLVDDHPESSSSPDTSNKITQNSGQSLTPLEAGQSLRNKETDNGAEPWEAKLDLWKPLNCLVEVASRSKSFKSSVQGSDAKLEAMQINESDNQVQKSKNKENKRKARVENEKIDSDPISLDTAKPNKVRKVRRKKDPLSGESVVSPQAVLDATSAKFKERTGPIWFSLVASEDQDGDEPLPQIPASYVRIKDGSVPVSFIQKYLMKKLDLTSEAEVEIKCMGQPVVPTLQLYSLVDLWLQTASTPQRIPATIGSSAKDFVMVLAYARKVPHP 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3455 429 MobiDBLite consensus disorder prediction 251 283 - -
Sto13g3455 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 425 IPR044807 GO:0004842
Sto13g3455 429 MobiDBLite consensus disorder prediction 159 189 - -
Sto13g3455 429 CDD RING-HC_PCGF 18 60 - -
Sto13g3455 429 MobiDBLite consensus disorder prediction 241 296 - -
Sto13g3455 429 MobiDBLite consensus disorder prediction 166 189 - -
Sto13g3455 429 MobiDBLite consensus disorder prediction 112 134 - -
Sto13g3455 429 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Sto13g3455 429 SMART ring_2 19 59 IPR001841 -
Sto13g3455 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 104 IPR013083 -
Sto13g3455 429 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Sto13g3455 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 425 - -
Sto13g3455 429 MobiDBLite consensus disorder prediction 112 147 - -
Sto13g3455 429 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Sto13g3455 429 SUPERFAMILY RING/U-box 14 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3455 Sto-Chr13 37579353 37584271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3455 2 348 C3H Transcription Factor Family AT2G30580 53.582 3.38e-116 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3455 K16277 - gmx:100793731 685.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0674 8 4186982 4191433 Sto13g3455 13 37579353 37584271 CCT
Sto13g3455 13 37579353 37584271 Sto8g0106 8 739564 743384 ECH
Sto13g3455 13 37579353 37584271 Sto13g3455 13 37579353 37584271 ECH