Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3450 ATGGAGGAGGTTGAAGAAGCTAATAGAACAGCTGTTCAGAGCTGTCATAGAGTTTTAAGCTTGTTGTCTCAGCCTCAGGATGAGGTTCCTTATGGCAATTTAATGGTGGAAACCGGAGAGGCTGTGTCCAGATTCAAGAAAGTTGTTTCCTTGCTTAACAATGGTTTGGGTCATGCAAGAGTCAGGAAGCTCAAGAAACTCCAAATCCCTTTTCCCCAAAGTATCCTCTTGGACAACAATCCAAATTGCAAAACAAATCCTCACCAAAAGAATCATCTTCAGTTTCTGCAATCTAGCTtttttgataataataataataataattcagttCAGGAATTGGGCTCTAACCTCGGGAATTCACTGTCTTTGGGAAACCCATCTTTGGAATTGAGCTCAAATGGTGGGAAAAGTCCTCTTCACCTAACCCAACAAGTGTCATCCCCCCACTATCACATCCTTCAGCAGCTTCAGCTTCAGCAGCAAAGAATGTTGCAAGCAAAACACCAAGCAGAAATGAATTTTGGAAGGAACAATAGTGGAATAAGTCTGAATTTTGATAGCTCTAGCTGTACGCCAACAATGTCATCTACTAGGTCTTTCATTTCTTCCTTGAGCATAGATGGAAGCGTGGCTAACATGGATGGGAGTGCCTTCCATTTGGTAGGAGCTCCACATTCTTCAGATCAGAATTCACAGCAACATAAGAGAAAATGTTCTGCAAGAGGAGATGAGGGGAGTGTGAAATGTGGGAGCAGTTCTAGATGCCATTGCTCGAAGAAGAGAAAGCACAGAGTGAAGAGGTCAATCAAAGTGCCTGCTATTAGCAACAAGCTTGCAGATATCCCTCCTGATGATTATTCATGGAGAAAATATGGGCAGAAGCCAATCAAAGGCTCTCCTCATCCTAGTAATTCCATCCAGTACCCTGCTGCTGAAGATACAAATTCAAAATTGAGGAAACTAAGTATAATCCCTTTTTTGTTCAGAGGATACTACAAGTGCAGCAGCATGAGAGGGTGCCCTGCTAGGAAACATGTTGAGAGATGCTTGGAAGAGCCTTCGATGCTAATTGTTACATACGAAGGCGAGCATAACCACCCTAGAATACCAGCACAATCTGCAACAAATGCATGA 1134 0.4206 MEEVEEANRTAVQSCHRVLSLLSQPQDEVPYGNLMVETGEAVSRFKKVVSLLNNGLGHARVRKLKKLQIPFPQSILLDNNPNCKTNPHQKNHLQFLQSSFFDNNNNNNSVQELGSNLGNSLSLGNPSLELSSNGGKSPLHLTQQVSSPHYHILQQLQLQQQRMLQAKHQAEMNFGRNNSGISLNFDSSSCTPTMSSTRSFISSLSIDGSVANMDGSAFHLVGAPHSSDQNSQQHKRKCSARGDEGSVKCGSSSRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPSNSIQYPAAEDTNSKLRKLSIIPFLFRGYYKCSSMRGCPARKHVERCLEEPSMLIVTYEGEHNHPRIPAQSATNA 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3450 377 Gene3D WRKY domain 267 369 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sto13g3450 377 SUPERFAMILY WRKY DNA-binding domain 328 368 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sto13g3450 377 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 303 IPR044810 GO:0003700
Sto13g3450 377 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 329 375 IPR044810 GO:0003700
Sto13g3450 377 SMART WRKY_cls 282 368 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sto13g3450 377 MobiDBLite consensus disorder prediction 224 244 - -
Sto13g3450 377 PANTHER WRKY DNA-BINDING PROTEIN 21-RELATED 2 303 - -
Sto13g3450 377 PANTHER WRKY DNA-BINDING PROTEIN 21-RELATED 329 375 - -
Sto13g3450 377 ProSiteProfiles WRKY domain profile. 277 369 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sto13g3450 377 SUPERFAMILY WRKY DNA-binding domain 280 303 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sto13g3450 377 Pfam WRKY DNA -binding domain 329 367 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sto13g3450 377 Pfam WRKY DNA -binding domain 284 303 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sto13g3450 377 Coils Coil 153 173 - -
Sto13g3450 377 Pfam Plant zinc cluster domain 235 280 IPR018872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3450 Sto-Chr13 37559636 37561186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3450 1 376 WRKY Transcription Factor Family AT2G30590 52.048 8.06e-123 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Sto13g3450 Plant_zn_clust 4.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3450 - - jre:109020122 488.034