Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3449 ATGTGCCCTAGCCAGAGAACCGAGTTAGTCACACAAACCCGTAATAGATCCGACAATGGTATAAATATTCGCCGTTATCAAACCCCAGAAACCCTAGTCATCTGTCTCCAGCCAGCACTCGTATTAGCCCTTCGATTTTCAGTCGCAGCCATGGCGGATGTTGAAGCAGATGTCGCACCAGGACAGCCGAAGAAGAGAACGTTCAAGAAGTTCAGTTTCAGAGGGGTCGATCTGGATGCTCTCCTTGACATGTCTACTGACGAGCTTGTCAAGCTCTTCCATGCACGCGCACGCAGAAGGTTTCAACGCGGTTTGAAACGAAAACCTATGGCACTTATCAAGAAGCTGCGTAAGGCGAAAAGGGAGGCCCCTGCTGGTGAAAAGCCAGAACCAGTGAGGACTCACCTCCGTAACATGATAATTGTACCTGAGATGATTGGTAGCATTATTGGTGTTTACAATGGGAAGACCTTCAATCAAGTTGAAATTAAACCTGAAATGATTGGTCATTATCTTGCTGAATTCTCAATCTCTTACAAGCCTGTTAAGCATGGTAGGCCTGGTATAGGTGCTACTCACTCTTCAAGGTTCATTCCTCTCAAGTGA 606 0.4653 MCPSQRTELVTQTRNRSDNGINIRRYQTPETLVICLQPALVLALRFSVAAMADVEADVAPGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFHARARRRFQRGLKRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3449 201 ProSitePatterns Ribosomal protein S19 signature. 154 178 IPR020934 GO:0003723
Sto13g3449 201 PRINTS Ribosomal protein S19 family signature 134 153 IPR002222 GO:0003735|GO:0005840|GO:0006412
Sto13g3449 201 PRINTS Ribosomal protein S19 family signature 154 166 IPR002222 GO:0003735|GO:0005840|GO:0006412
Sto13g3449 201 PRINTS Ribosomal protein S19 family signature 166 181 IPR002222 GO:0003735|GO:0005840|GO:0006412
Sto13g3449 201 Gene3D 30s Ribosomal Protein S19; Chain A 59 201 IPR023575 GO:0003735|GO:0005840|GO:0006412
Sto13g3449 201 SUPERFAMILY Ribosomal protein S19 105 185 IPR023575 GO:0003735|GO:0005840|GO:0006412
Sto13g3449 201 PANTHER LOW QUALITY PROTEIN: 40S RIBOSOMAL PROTEIN S15 52 201 - -
Sto13g3449 201 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 52 201 IPR002222 GO:0003735|GO:0005840|GO:0006412
Sto13g3449 201 TIGRFAM uS19_arch: ribosomal protein uS19 68 201 IPR005713 GO:0003735|GO:0006412|GO:0015935
Sto13g3449 201 Pfam Ribosomal protein S19 99 184 IPR002222 GO:0003735|GO:0005840|GO:0006412
Sto13g3449 201 Hamap 30S ribosomal protein S19 [rpsS]. 97 190 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3449 Sto-Chr13 37552472 37554452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3449 51 201 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 87.417 1.70e-91 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3449 K02958 - nnu:104612419 299.671