Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3435 ATGGAAGGAGAGTATGGGAGAAGAGAGAAGGTGGAGGTTGAGCATAAAGAAGAGGGAAAAAGGTTAAAGTTTGATGATGAGGAGCATAATATTAATAGGTGGGGAAGTTGGTGGCCTGCGAGGAATTACGCATGTAGCTTTTGCAAGAGAGAATTCAGATCAGCTCAAGCTTTGGGTGGTCATATGAACGTTCATAGGAGAGATAGGGCTAGATTGAGCAGTGGCCATATGCTCATCACATCTTCTTCCAGCCTTCCTCAAAGCAGATCAGAAAAAATTCAGATTCATAATTATTATGAGGAGGACTTGAACGCTACTTGTGGTTGTACATGTGCAATTGCGAAGGAGGAAGATCAGGCCATATATCTCAAGCTAAATATGGAATTCAGCAGGTACCCAGAAGAGTACTCCTGGAAGAGGTCGTGCAGCGAAGAAAGGATCGATCAGACCAAAATGAGATACGGGAATTGGGAGGTCCTATGCGTGTTTTGCAAGAGAGGCTTCACTACCGCACAGGCTTTGGGTGGACACATGAATATTCACAGGAAGGATAGagccaagcccaagcccaagcccactATTACTCCAAATTCACCTTCAACCAAATTACTCCATCGTCACTACAACGACTATTCAGATCTTGGCTTCTACTACTCTCCCCTCATGATCATGAGGTAG 678 0.4233 MEGEYGRREKVEVEHKEEGKRLKFDDEEHNINRWGSWWPARNYACSFCKREFRSAQALGGHMNVHRRDRARLSSGHMLITSSSSLPQSRSEKIQIHNYYEEDLNATCGCTCAIAKEEDQAIYLKLNMEFSRYPEEYSWKRSCSEERIDQTKMRYGNWEVLCVFCKRGFTTAQALGGHMNIHRKDRAKPKPKPTITPNSPSTKLLHRHYNDYSDLGFYYSPLMIMR 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3435 225 MobiDBLite consensus disorder prediction 179 199 - -
Sto13g3435 225 Pfam C2H2-type zinc finger 161 183 - -
Sto13g3435 225 Pfam C2H2-type zinc finger 43 67 - -
Sto13g3435 225 ProSitePatterns Zinc finger C2H2 type domain signature. 161 181 IPR013087 -
Sto13g3435 225 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 21 91 - -
Sto13g3435 225 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 135 207 - -
Sto13g3435 225 Gene3D Classic Zinc Finger 38 99 - -
Sto13g3435 225 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Sto13g3435 225 SMART c2h2final6 43 65 IPR013087 -
Sto13g3435 225 SMART c2h2final6 159 181 IPR013087 -
Sto13g3435 225 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Sto13g3435 225 ProSiteProfiles Zinc finger C2H2 type domain profile. 159 186 IPR013087 -
Sto13g3435 225 PANTHER OS07G0101800 PROTEIN 135 207 - -
Sto13g3435 225 PANTHER OS07G0101800 PROTEIN 21 91 - -
Sto13g3435 225 SUPERFAMILY beta-beta-alpha zinc fingers 41 181 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3435 Sto-Chr13 37440230 37447473 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3435 35 92 C2H2 Transcription Factor Family AT2G37740 65.000 9.22e-19 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto13g3435 zf-C2H2_6 6.2e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3435 - - adu:107493056 90.1225