Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3422 ATGGAAAGTAAAATGAAGTGGCCGTAcacaagagaagaagagaggtggGAATTATGTTATAAAGGAAGCGGAAGCagtaatagtaatagtaatagtaatagtGGGGGAGTGGATGAAGCTGTGCTTGACTGTCTTTCCTTCGATATGGTAGACTCaattgagaagaagaagaaggaagtaGAGAAAGGAAAAGCATACGTAGGAGTGAGGAAAAGGCCTTGGGGGAAATACGCAGCAGAGATCAGAGACAGCACAAGGAATGGAGCAAGAGTGTGGCTCGGAACATTCCAGACTCCAGAAGCAGCTGCTTTAGCATATGACCAAGCTGCATTTTGCATGAGAGGCACTAATGCTCTGCTTAATTTCCCACTCCAAACCGTCACACAATCTTTGCAAGCCTTCAATAATCCATCTACTCATACTACTCTCTCCCCTGCCTTACACCTCAAGCACTAA 456 0.3882 MESKMKWPYTREEERWELCYKGSGSSNSNSNSNSGGVDEAVLDCLSFDMVDSIEKKKKEVEKGKAYVGVRKRPWGKYAAEIRDSTRNGARVWLGTFQTPEAAALAYDQAAFCMRGTNALLNFPLQTVTQSLQAFNNPSTHTTLSPALHLKH 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3422 151 SUPERFAMILY DNA-binding domain 65 124 IPR016177 GO:0003677
Sto13g3422 151 PANTHER DNA-BINDING DOMAIN 54 150 IPR044808 GO:0003700|GO:0009873
Sto13g3422 151 CDD AP2 66 123 IPR001471 GO:0003700|GO:0006355
Sto13g3422 151 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Sto13g3422 151 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Sto13g3422 151 PANTHER OS09G0572000 PROTEIN 54 150 - -
Sto13g3422 151 SMART rav1_2 65 129 IPR001471 GO:0003700|GO:0006355
Sto13g3422 151 Pfam AP2 domain 66 115 IPR001471 GO:0003700|GO:0006355
Sto13g3422 151 ProSiteProfiles AP2/ERF domain profile. 65 123 IPR001471 GO:0003700|GO:0006355
Sto13g3422 151 Gene3D AP2/ERF domain 64 125 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3422 Sto-Chr13 37342849 37343304 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3422 48 151 AP2-EREBP Transcription Factor Family AT2G31230 55.769 2.53e-36 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto13g3422 AP2 2.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3422 K14516 - gmx:100811486 133.265