Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3421 ATGGGGAGATTGGAAGTGGAAGGATCTAATCTAATCCCAGAAGAatgggaagaagatgaagaagcttCAGGGTTTTTCCTGGAATCTTACAAATCAAGGAGCAGTAGTAGTAAAAGTGTCGTTGAGTCAGTTCGCTTGGAGATGGTAAGTAGAAGAGATGGTAAGGAATCAGAGGGAAGTAAATATAAGAGTTGTAGtaaggagaaggaagaaagagCATACATAGGAGTGAGGAGAAGGCCATGGGGAAAGTTCGCAGCAGAGATCAGAGACACGACAAGGAATGGAGTGAGAGTATGGCTTGGAACCTTCCAGAGTGCAGAAGAAGCTGCTTTGGCATATGACCAAGCTGCCTTCTGTATGAGAGGTTCCAATGCGGTGCTTAATTTTCCAGTCCAAAGGGTTAAACAGTCATTGCAAGACATCAATTATGGAGGCTCTCGAGGTCTATCCCCAGCATTACAGCTCAAGGAGAAGCATTACATCCAACGCAAATTGTCAGCCAAGACTAAGAAAATCAACAAACCCCATAACTCATCAACATCAACTACTAGTCTGCTTGTCTTGGAGGACTTGGGGGTTGAATATCTCGACCACCTTCTCACCCTTTATGATCattga 621 0.4106 MGRLEVEGSNLIPEEWEEDEEASGFFLESYKSRSSSSKSVVESVRLEMVSRRDGKESEGSKYKSCSKEKEERAYIGVRRRPWGKFAAEIRDTTRNGVRVWLGTFQSAEEAALAYDQAAFCMRGSNAVLNFPVQRVKQSLQDINYGGSRGLSPALQLKEKHYIQRKLSAKTKKINKPHNSSTSTTSLLVLEDLGVEYLDHLLTLYDH 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3421 206 Pfam AP2 domain 74 123 IPR001471 GO:0003700|GO:0006355
Sto13g3421 206 CDD AP2 74 133 IPR001471 GO:0003700|GO:0006355
Sto13g3421 206 SMART rav1_2 73 137 IPR001471 GO:0003700|GO:0006355
Sto13g3421 206 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 46 203 - -
Sto13g3421 206 Gene3D AP2/ERF domain 73 133 IPR036955 GO:0003700|GO:0006355
Sto13g3421 206 SUPERFAMILY DNA-binding domain 73 132 IPR016177 GO:0003677
Sto13g3421 206 PANTHER DNA-BINDING DOMAIN 46 203 IPR044808 GO:0003700|GO:0009873
Sto13g3421 206 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Sto13g3421 206 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Sto13g3421 206 ProSiteProfiles AP2/ERF domain profile. 73 131 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3421 Sto-Chr13 37337463 37338200 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3421 56 201 AP2-EREBP Transcription Factor Family AT3G23240 56.164 2.90e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto13g3421 AP2 4.9e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0698 8 4373520 4374423 Sto13g3421 13 37337463 37338200 CCT
Sto13g3421 13 37337463 37338200 Sto13g3421 13 37337463 37338200 ECH