Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3419 ATGCCAAAAATGGAGGGAGATgatgagaagaaagaaaggggaTCGGAGGTTCGATACAGAGGAATACGAAGAAGGCCATGGGGGAAGTTCGCCGCGGAGATTCGAGATCCGACCCGAAAGGGGACCCGTATCTGGCTAGGAACATTCGAGACGGCGGAGGAGGCGGCAAGGGCTTACGATGCAGCAGCATTCCATTTCAGGGGACACAGAGCCATTCTGAACTTCCCCAATGACTACCAACACCATTCTAACTCTCGTTTGCCTCTTCCTCTAATTCCCTCCAATTCTTCCTCCTCCCAAACACCCACAATGCCTCACCCTCCACACACCACTCTGGAATTGGAGCCGGTTCAattcctttaa 363 0.4904 MPKMEGDDEKKERGSEVRYRGIRRRPWGKFAAEIRDPTRKGTRIWLGTFETAEEAARAYDAAAFHFRGHRAILNFPNDYQHHSNSRLPLPLIPSNSSSSQTPTMPHPPHTTLELEPVQFL 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3419 120 MobiDBLite consensus disorder prediction 83 107 - -
Sto13g3419 120 MobiDBLite consensus disorder prediction 83 112 - -
Sto13g3419 120 PANTHER DNA-BINDING DOMAIN 11 101 IPR044808 GO:0003700|GO:0009873
Sto13g3419 120 Pfam AP2 domain 18 69 IPR001471 GO:0003700|GO:0006355
Sto13g3419 120 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Sto13g3419 120 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Sto13g3419 120 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 11 101 - -
Sto13g3419 120 CDD AP2 18 78 IPR001471 GO:0003700|GO:0006355
Sto13g3419 120 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Sto13g3419 120 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Sto13g3419 120 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Sto13g3419 120 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3419 Sto-Chr13 37325207 37325698 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3419 16 79 AP2-EREBP Transcription Factor Family AT3G23230 79.688 7.52e-35 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Sto13g3419 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3419 - - gmx:100500462 131.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3419 13 37325207 37325698 Sto13g3419 13 37325207 37325698 ECH