Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3408 ATGCCGTCTCTAATATCCCCAGGGAAAATACATCGTTTGGAGATGGAAAATTTCAAGTCCTATAAGGGGTTTCAAGTAATTGGCCCTTTCTACGACTTCACCGCAATTATTGGGCCCAATGGTGCTGGCAAGTCGAACCTTATGGACGCTATTAGCTTTGTGCTCGGTGTAAGGACAGGCCAGTTACGTGGGGCTCAACTGAAGGACTTAATCTACGCCTACGACGACAAGGAAAAGGAGCAGAAAGGACGGAGGGCATTCGTTCGTTTGGTTTATCAGCTCGGAAATGGCTCAGAGATTCAATTCACCAGGACCATCACGAGCGCCGGTGGGAGCGAGTACCGGATTGACGGGAACCTTGTAACGTGGGACGTGTATAATGCTAGACTGAAGTCACTTGGCATTCTCGTCAAGGCTCGCAATTTCTTGGTGTTTCAGGCCATAGTCCACGGCAACATGTGCTCGCCAAAAGAAAACGTGGAATGA 486 0.4897 MPSLISPGKIHRLEMENFKSYKGFQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAYDDKEKEQKGRRAFVRLVYQLGNGSEIQFTRTITSAGGSEYRIDGNLVTWDVYNARLKSLGILVKARNFLVFQAIVHGNMCSPKENVE 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3408 161 Gene3D - 8 153 IPR027417 -
Sto13g3408 161 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 9 150 - -
Sto13g3408 161 Pfam RecF/RecN/SMC N terminal domain 10 136 IPR003395 -
Sto13g3408 161 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 9 150 - -
Sto13g3408 161 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 146 IPR027417 -
Sto13g3408 161 CDD ABC_SMC1_euk 10 149 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3408 6 92 Structural Maintenance of Chromosomes family AT5G07660 36.170 7.05e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3408 K06636 - lja:Lj5g3v1073870.1 278.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3408 13 37268268 37268874 Sto13g3408 13 37268268 37268874 ECH