Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3402 atggGACTTAGAGACATTGGAGCATCACTTCCTCCTGGGTTTCGGTTTTATCCCAGCGATGAGGAGCTTGTGTGTCATTACCTCTTCAACAAGATCTCTAATGATCATCTTCTCAAAGGCACTTTGATCGAAATTGACTTGCATACATGCGAGCCATGGCAGCTtcctgAGGTGGCTAAGCTGAACGCGAACGAGTGGTACTTCTTCAGCTTTCGTGACCGTAAATACGCCACAGGGTTCCGGACCAATAGGGCGACGACATGTGGATATTGGAAGGCAACAGGGAAGGATAGGACAGTGGTGGACCCAATGACACGTGAGGTTGTAGGGATGAGGAAGACGTTGGTGTTCTACAGGAACAGAGCCCCAAATGGTATGAAAACTGGTTGGATCATGCATGAGTTCCGCTTGGAGACCCCACACATGCCACCTAAGGAGGACTGGGTTTTGTGTAGAGTTTTTCACAAAAGCAGAGCAGAAAACAGTGGTGGAAAACTCAGCCCACAAGAAATGGACATGTTTGAGACCTTACAACCTTCGTCCTTTGCTTTGGCATCATCATCTCCAACCAATCAAACTCTGCCTCCTGGCTTCACCTCTAATTTCTCCTCCATGCCAACCCATAATTATCAGAATCAAAACACTTCTTTCATGAATCTTCTTCAATTTTCCCGGGAAACAAACACCAGTAATAATGTTATTCCCAAAGGTGATCATGGATATGATGGATTCTTGTGGGACATGGATCTGCACGAAGAGAATAGCTTCCAAAATGACGCCGTGGCCTCAAACTTGGACGGAATGAGATTCGAGGTTGATGATGATAGTGCAATCCACTTTAATTGTAGTGATAGTCATATTGTAATTTCTAGTGATTCCAAAGGCATATATCTCTTCAATCCTCACACTAAGGTGGCTCCTGCCCAGCTATGGTCTGCAGTAATTAAAGAGATGCTTTCACTCCAAAACGCGATTTGCTTCTGGCCTTTGTCGCCATAA 999 0.4474 MGLRDIGASLPPGFRFYPSDEELVCHYLFNKISNDHLLKGTLIEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTCGYWKATGKDRTVVDPMTREVVGMRKTLVFYRNRAPNGMKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSRAENSGGKLSPQEMDMFETLQPSSFALASSSPTNQTLPPGFTSNFSSMPTHNYQNQNTSFMNLLQFSRETNTSNNVIPKGDHGYDGFLWDMDLHEENSFQNDAVASNLDGMRFEVDDDSAIHFNCSDSHIVISSDSKGIYLFNPHTKVAPAQLWSAVIKEMLSLQNAICFWPLSP 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3402 332 Gene3D NAC domain 19 160 IPR036093 GO:0003677|GO:0006355
Sto13g3402 332 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Sto13g3402 332 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Sto13g3402 332 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 275 - -
Sto13g3402 332 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Sto13g3402 332 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3402 Sto-Chr13 37232395 37236291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3402 6 156 NAC Transcription Factor Family AT1G56010 59.748 9.81e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto13g3402 NAM 2.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3402 - - gmx:100806284 407.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0715 8 4503419 4504795 Sto13g3402 13 37232395 37236291 CCT
Sto13g3402 13 37232395 37236291 Sto13g3402 13 37232395 37236291 ECH