Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3397 ATGGAGGAGGACGAGGACAGAATCGTGCTTAATAGTTTGGGCGTAGAGTCTGCCAATCCCGAATGTATCGAGAGAGACGTATTAGCTAAGGCAAGGAATGATGTGGCGACAGTCACTGAAATTGATGGGAGTTCAAAGGAGGAATCTCCTCATAAGTCGGAAAATGTTGATTCATCGTCTACTAGCAAAGCAGAACTTTATCATAAGTTAAAGGCTGTTGATTTCGAAATAGATGCAGTTGCTTCCACTATACAAGAGGTGAGAAATGTTGGTAGTAATGAAGATTATGGTGGTGTTGGTCATGACAGCGTGGAGCAAGGGATTGCAGAGGATAATTCCTCCAATAATTTGAATCTTCAGCATGTTCTTGCTGCTGATAGGTTAGAAAGCCTAAAGAAGACAAAGGCTCAACTGGAAAAAGAGCTTTCAGATTTCTTCAAGGAGAAGGCTTCCAAAAGTATTGATCATGACGAAGTAATCTTTGATTTGGTTAAGGAAGAGCCAAGACCCAAGCGGAAGCCTAAAGAAGTTAAAAAATTAGGCAAAAGCTCAGGAAAACGGCATAAAACTGTCTCATTTAATGATGACGTTGATTTTGATGCAGTTTTGGATGCTGCCTCTGCAGGCTTTGTTGAAACAGAAAGGGACCAATTGGTGAGGAAAGGAATTTTAACCCCTTTTTCTAACCTGAAGGGTTTTGAGCGCCGTTTTCAACAATCAGAAGCATCTAGTAGCTATAATGCAACTCAAGAAGAAAGAATGGATGATCTTGCTTCTTCTAGTGTTGAAAGAGCTGCCAGATCGATATCTGAGGCGGCAAGAGCTCGCCCAACTATCAAGCTGCTGGAGTCTGAAGATATGCCGAAGCTTGATGCTCCCACTCGTCCTTTTGTCAGACTCAGAGAAATGGATAAAGCGTGTTTGAGGCCATTCTTGTTAGGACAAGAGAAAAGGGACCCCAAAAAAACTTCTGAGCCAGACTTGAGCATGCTTTCCTTAATGTTGATTATAAAGTACAATTATTTTACTCTGATGACTGAAGGATCTGTGGATGTGAGTGAAGAGGATCAGGATGTTGAACTCGCTGATCATGAACCTTCATATGTAACATTAGAAGGCGGGCTGAAAATCCCTGATAATATTTTTGATGCACTATTTGAATATCAGAGGATAGGTGTCCAATGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGTGATGAGATGGGTCTTGGTAAAACCATCCAGGTCTTATCTTTTCTTGGTGCCTTGCATTTTAGTGGCATGTACAAACCAAGCATTATTATTTGTCCTGTTACACTCTTGCGACAATGGAGAAGGGAAGCTCAAAAGTGGTACCCAAAATTTCATGTAGAGCTTTTACATGATTCTGCTCAAGATCCTGAAACTAGAAAGAAGCAATCCAAATCTGAGGAATCAGACTATGAAACTAATAGTTCAATTGACAGCGATTGTGAAAGGAATATACAATCAAGAAACACAAGAAAATGGGAATCCCTGATACGTCGTGTCATGAGATCAGAATCTGGATTGCTTATCACCACATATGAGCAGCTAAGAATATTGCGAGACCTGTTGCTTGATATTGAATGGGGTTATGCAATTCTTGATGAAGGGCACAGAATAAGGAATCCAAATGCTGAAGTTACCCTAGTTTGCAAACAGCTACAGACTGTACACCGCATCATAATGACTGGTTCACCTATACAGAACAAACTGACTGAATTGTGGTcattatttgattttgttttcccTGGAAAGTTGGGTGTTTTGCCTGTATTTGAAGCTGAGTTTGCGGTACCTATAGCAGTTGGTGGATATGCTAATGCTTCACCGTTACAAGTATCTACAGCTTATAGGTGTGCTGTTGTGCTACGTGATTTAATCATGCCTTATCTTCTCCGACGAATGAAGGCAGATGTGGATGCCCAACTTCCAAAGAAAACTGAGCATGTTCTATTTTGCAGCCTTACAACAGAGCAATTATCTGCTTATAGAGCATTTTTGGCAAGCACTGAAGTGGAGCAAATCTTGGATGGACGAAAGAATTCTCTTTATGGAATTGATATAATGCGCAAGATTTGCAACCACCCTGACCTTCTTGAAAGGGAACATGCCTTCAGCAATCCGGATTATGGAAATCCAGAACGTAGTGGGAAAATGAAAGTTGTAGCACAGGTGCTTAATGTTTGGAAGGAACAGGGTCACCGTGTTCTTCTTTTTACTCAAACCCAACAAATGCTTGACATTATTGAGAGTTTTTTGACTACTGCTGGTCATAATTACCGGAGAATGGATGGAGTCACTCCCATAAAACAAAGAATGGCTTTAATAGATGAATTCAATGACTCAAGTGAAgtatttgttttcattttaacAACAAAAGTTGGGGGTTTGGGAACAAATCTTACTGGTGCAGACAGGGTGATTATCTTTGACCCTGATTGGAATCCTTCAACTGACATGCAGGCCAGAGAACGTGCTTGGCGAATTGGTCAGAAACGGGATGTGACAGTGTATAGGTTGATCACACGTGGAACTATAGAGGAAAAAGTATATCACCGTCAGATTTACAAACATTTTCTTACTAATAAAATATTGAAGAACCCACAGCAGAAAAGGTTCTTTAGAGCTCGGGATATGAAAGATCTTTTTACACTGAATGTGGATGGTGAAACCAGGTCAACTGAAACGTCAACCATTTTCAGTCAAATATCTGAAGAAGTAAATATTGTTGGGACTCATGAAGATAAACATGATAAGCATAAACATCCCCAAACTGCTGAACTAGGTTCTGATGACGTTGCAGTTGCTAACGATGGCAGATCAGAGACCCAACCACGTAGGAGAAAGGGGAAAGAAAAAGCAGATGGTCATGGTGAGGGAGATGAAGAAACAAATATATTGAAAAGTCTTTTTGATTCTCACGGGCTACATAGTGCTGTGAACCATGATTTGATCATGAATGCTAACGATGAGGAAAAGATGAGGCTTGAGGAGAAAGCTTCCCAGGTTGCACAGAAAGCTGCAGAAGCTTTACGTCAGTCACGAAAGCTCCGAAGCCATGACAGCATCTCTGTTCCTACATGGACAGGAAGGTCAGGAACTGCAGGTGCACCGTCATCTGTTCGGCGGAAGTTTGGTTCAACTGTGAATGCCCAGTTGGTAAATAATTGCAAAGTATCAGATGAATCGTCCAGCAATGGAACTAACAAATTAAATGGGTTTTCTGCTGGGGCATCATCTGGTAAGGCATTATCCTCTGCTGAACTTTTGGCTCAAATAAGAGGTAACCTAGAAAAAGCCATTGGTGCTGGGCTAGAACAACAATTTGGTATGACCGTAAACTCTTCTAATCAAGGAAGATCTATAGATGTTGGATCTTCTAGAGCTTCTAAAAAGTTACCTGGAGTGCAACCTGAAGTATTGATTCGGCAAATCTGTACATTTCTACAACAGAGAGGTGGTAGTTGCAATTCTTCCAGTATAGTCCAGCATTTTAAGGACAGGATACATGAGACAGATCTTGCCCTGTTCAAGAATCTGTTAAAGGAAATAGCAACTTTGGAAAAAGGACCAAATGGATCGCATTGGATTCTGAAGCCAGACTATAAAGAATAG 3651 0.4062 MEEDEDRIVLNSLGVESANPECIERDVLAKARNDVATVTEIDGSSKEESPHKSENVDSSSTSKAELYHKLKAVDFEIDAVASTIQEVRNVGSNEDYGGVGHDSVEQGIAEDNSSNNLNLQHVLAADRLESLKKTKAQLEKELSDFFKEKASKSIDHDEVIFDLVKEEPRPKRKPKEVKKLGKSSGKRHKTVSFNDDVDFDAVLDAASAGFVETERDQLVRKGILTPFSNLKGFERRFQQSEASSSYNATQEERMDDLASSSVERAARSISEAARARPTIKLLESEDMPKLDAPTRPFVRLREMDKACLRPFLLGQEKRDPKKTSEPDLSMLSLMLIIKYNYFTLMTEGSVDVSEEDQDVELADHEPSYVTLEGGLKIPDNIFDALFEYQRIGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSGMYKPSIIICPVTLLRQWRREAQKWYPKFHVELLHDSAQDPETRKKQSKSEESDYETNSSIDSDCERNIQSRNTRKWESLIRRVMRSESGLLITTYEQLRILRDLLLDIEWGYAILDEGHRIRNPNAEVTLVCKQLQTVHRIIMTGSPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFAVPIAVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVDAQLPKKTEHVLFCSLTTEQLSAYRAFLASTEVEQILDGRKNSLYGIDIMRKICNHPDLLEREHAFSNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIIESFLTTAGHNYRRMDGVTPIKQRMALIDEFNDSSEVFVFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFRARDMKDLFTLNVDGETRSTETSTIFSQISEEVNIVGTHEDKHDKHKHPQTAELGSDDVAVANDGRSETQPRRRKGKEKADGHGEGDEETNILKSLFDSHGLHSAVNHDLIMNANDEEKMRLEEKASQVAQKAAEALRQSRKLRSHDSISVPTWTGRSGTAGAPSSVRRKFGSTVNAQLVNNCKVSDESSSNGTNKLNGFSAGASSGKALSSAELLAQIRGNLEKAIGAGLEQQFGMTVNSSNQGRSIDVGSSRASKKLPGVQPEVLIRQICTFLQQRGGSCNSSSIVQHFKDRIHETDLALFKNLLKEIATLEKGPNGSHWILKPDYKE 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3397 1216 MobiDBLite consensus disorder prediction 167 187 - -
Sto13g3397 1216 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 397 596 IPR014001 -
Sto13g3397 1216 Coils Coil 121 148 - -
Sto13g3397 1216 Pfam Helicase conserved C-terminal domain 735 842 IPR001650 -
Sto13g3397 1216 MobiDBLite consensus disorder prediction 470 486 - -
Sto13g3397 1216 MobiDBLite consensus disorder prediction 39 63 - -
Sto13g3397 1216 PANTHER SNF2/RAD54 FAMILY MEMBER 250 1078 - -
Sto13g3397 1216 Pfam SNF2-related domain 388 710 IPR000330 GO:0005524|GO:0140658
Sto13g3397 1216 CDD DEXHc_ERCC6 385 595 - -
Sto13g3397 1216 SMART ultradead3 381 604 IPR014001 -
Sto13g3397 1216 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 733 892 IPR001650 -
Sto13g3397 1216 MobiDBLite consensus disorder prediction 1032 1053 - -
Sto13g3397 1216 MobiDBLite consensus disorder prediction 953 974 - -
Sto13g3397 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 648 912 IPR027417 -
Sto13g3397 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 646 IPR027417 -
Sto13g3397 1216 Gene3D - 652 941 IPR027417 -
Sto13g3397 1216 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 250 1078 - -
Sto13g3397 1216 CDD SF2_C_SNF 728 853 - -
Sto13g3397 1216 Coils Coil 998 1025 - -
Sto13g3397 1216 MobiDBLite consensus disorder prediction 470 494 - -
Sto13g3397 1216 Gene3D - 357 645 IPR038718 -
Sto13g3397 1216 MobiDBLite consensus disorder prediction 925 974 - -
Sto13g3397 1216 MobiDBLite consensus disorder prediction 1024 1053 - -
Sto13g3397 1216 SMART helicmild6 759 842 IPR001650 -
Sto13g3397 1216 MobiDBLite consensus disorder prediction 925 939 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3397 Sto-Chr13 37199725 37206186 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3397 685 896 RAD5 or RAD16-like Gene Family AT5G22750 30.233 4.32e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sto13g3397 SNF2_N 1.5e-61 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3397 K10841 - gmx:100820025 1775.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3397 13 37199725 37206186 Sto13g3397 13 37199725 37206186 ECH