Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3388 ATGAGGGGTAGGATCAGAGAAGATAGGAAAGTTGATGTCAGGAGGAGTCTGAGGAAGGCAATGAAATGCCTAGGCTCAGGGGAGCAATCAAGAAGAGCAGATACTGGCAATATAGAAGATGCTGAATCATCCCTTTGTGAGAGTGGTTGTTTGAACTATGAGGAAGCTAGAGCTCTTCTAGGAAGATATGAATATCAGAAAGGAAATATAGAAGCTGCTCTCCATGTTTTTGAGCGAATAGATATTGGGGTTGTGACTTCCATGACTAAAAATTCTCTTGCTAGAAGGGCAAAACGCCATAAGGGACACTCCCATAATTATGCTACACCACCAATGTCTATACATGCTGTTGGCTTGCTGTTGGAAGCAGTTTTCCTAAAAGCAAAGTCTTTGCAATTTCTTGGAAGGTTTAAAGAAGCTGCCCTGTCTTGCAAAGTTATTCTGGACATAGTTGAATCTTCATTACCCCAAGGTTTGCCTGAAAACTTTGGTGCTGAATGTAAATTGCAGGAGACTTTGAGCAAGGCAGTTGAGTTGCTTCCTGAATTGTGGCAACTTGCTGATTGTCCACTTGAAGCCATTATGTCCTACCGGAGGGCACTTCTTTATAAGTGGAATCTTGATACAATGGCTGCAGCAAAGATTCAGAAACAGTTTGCTGTTTTGCTTTTATATAGTGGAGAAGAAGCAACCCCTCCAAGTCTCTGTTCCCAAATGGACGTCTCATTTGTACCCAGAAACAACATAGAGGAGGCTATACTTCTTTTAATGATTCTTCTCAGACAAGTCTCTCTCAATAGAATTGAGTGGGATCCTTCAATTTTGCATCACCTTTCATTTGCTCTATCTGTTTCAGGGGATTTGACAGCTTTAGCCAATCAATGGGAAGAATTGCTCCCCTCCACTGTCAATCCAAGAGAAATGTACTACACTCTTGCTCTCTGTTATTATGGAGCAGATATGGACTCGGTGTCGCTGGATCTTCTTAGAAAATTGTTGAGTCGTAGAGAAGACCCCAACCATATTTTAGCTTTATTAATGGCTTCTAAGATTTGTTGCAAGAACACTAGTCTTGCTGGAGAGGGGGTAAGCTTTGCTCGCAGAGTGCTTGAGAACTTGGAAGGAAGATGTGATCAGTTGAAAAGTCTTGCCAATTGCTTACTTGGTGTTTCACTGTCAGCACATTCAAGATCAGTCATTTCTGATTCTGAGAGGTTTAAGAGACAATCTGAGGCACTTCACCACTTGGAAATTGCCTGCAGAATGACCAGGATGAGAAACTCCCATATGCTATACCATCTCAGTTTAGAATACGCAGAACAAAGGAAGTTGGATGCTGCACTTGATCATGCCAAATGCTGTCTAGAACTGGAAGCAGGGTCAAATGTTAAAGGGTGGTTATTGTTAGCCCGTATATTATCAGCTCAACATCGGTTTTTGGATGCTGAATCTATTATTGATGCTGCTTTGGATCAGACTGGGAAATGGAATCAAGGAGATTTGTTACGAACAAAAGCTAAACTTCAGATTGCACAGGGCCAGTTAAGGAGTGCCATGAAGACATACACTCAGCTTCTTTCTGTTCTTCAAGTTCAGAGTAAAACTTTTGGTTCTGGGAAGAAGCTGTATAAGGATGGAAGAGATGATGCTAGGAACTTGGAAATGGAAATATGGCACGATCTTGCTTTTTTATTCATAAGCCTTTCACATTGGCATGATGCAGAAGTGTGTCTTTCAAAATCCAAGGCCATCAAACTATACACTGCTTCTAGATTTCATGCAACAGGTCTGATATTGCAAGCAAAGGGGCTTTATCAAGAGGCTCTAAAAGCTTTTGGTGATGCTTTGGAGATTGATCCCAGCCATGTGCCAAGCTTGATCTCTAGTGCTGTGGTTCTGAGAGGGTGCAGTAATGAATCATGTGCTGTAGTGAGAAGGTTTCTGATGGATGCATTACGGCATGACAGATTGAGTGCTTCTGCTTGGTACCATCTTGGCCTTCTTCACAAGGCTGAGggcacatcatcatcattattagaAGCCATGGAATGTTTTGAGGCTGCAAACTTCCTTGAAGAATCTTCGCCAGTTGAACCTTTCAGATGA 2106 0.416 MRGRIREDRKVDVRRSLRKAMKCLGSGEQSRRADTGNIEDAESSLCESGCLNYEEARALLGRYEYQKGNIEAALHVFERIDIGVVTSMTKNSLARRAKRHKGHSHNYATPPMSIHAVGLLLEAVFLKAKSLQFLGRFKEAALSCKVILDIVESSLPQGLPENFGAECKLQETLSKAVELLPELWQLADCPLEAIMSYRRALLYKWNLDTMAAAKIQKQFAVLLLYSGEEATPPSLCSQMDVSFVPRNNIEEAILLLMILLRQVSLNRIEWDPSILHHLSFALSVSGDLTALANQWEELLPSTVNPREMYYTLALCYYGADMDSVSLDLLRKLLSRREDPNHILALLMASKICCKNTSLAGEGVSFARRVLENLEGRCDQLKSLANCLLGVSLSAHSRSVISDSERFKRQSEALHHLEIACRMTRMRNSHMLYHLSLEYAEQRKLDAALDHAKCCLELEAGSNVKGWLLLARILSAQHRFLDAESIIDAALDQTGKWNQGDLLRTKAKLQIAQGQLRSAMKTYTQLLSVLQVQSKTFGSGKKLYKDGRDDARNLEMEIWHDLAFLFISLSHWHDAEVCLSKSKAIKLYTASRFHATGLILQAKGLYQEALKAFGDALEIDPSHVPSLISSAVVLRGCSNESCAVVRRFLMDALRHDRLSASAWYHLGLLHKAEGTSSSLLEAMECFEAANFLEESSPVEPFR 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3388 701 Coils Coil 363 383 - -
Sto13g3388 701 SMART tpr_5 121 154 IPR019734 GO:0005515
Sto13g3388 701 SMART tpr_5 589 622 IPR019734 GO:0005515
Sto13g3388 701 SMART tpr_5 463 496 IPR019734 GO:0005515
Sto13g3388 701 SMART tpr_5 499 532 IPR019734 GO:0005515
Sto13g3388 701 SMART tpr_5 659 695 IPR019734 GO:0005515
Sto13g3388 701 SMART tpr_5 306 339 IPR019734 GO:0005515
Sto13g3388 701 SMART tpr_5 428 461 IPR019734 GO:0005515
Sto13g3388 701 Gene3D Tetratricopeptide repeat domain 554 696 IPR011990 GO:0005515
Sto13g3388 701 Gene3D Tetratricopeptide repeat domain 15 386 IPR011990 GO:0005515
Sto13g3388 701 SUPERFAMILY TPR-like 437 635 IPR011990 GO:0005515
Sto13g3388 701 PANTHER PROTEIN NPG1 22 701 IPR043376 -
Sto13g3388 701 Gene3D Tetratricopeptide repeat domain 387 553 IPR011990 GO:0005515
Sto13g3388 701 ProSiteProfiles TPR repeat profile. 589 622 IPR019734 GO:0005515
Sto13g3388 701 PANTHER PROTEIN NPGR2 22 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3388 Sto-Chr13 37142074 37145061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3388 1 701 Calmodulin-binding Proteins AT4G28600 56.503 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3388 K21843 - gmx:100800762 980.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3388 13 37142074 37145061 Sto8g0737 8 4664218 4670120 CCT
Sto13g3388 13 37142074 37145061 Sto13g3388 13 37142074 37145061 ECH