Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3383 ATGGAAGCACGCACTGCTTCCTCCATTGAAAGATCAAGTTCTAAGCAACTTAGTAACATGGGTATGTCTAGTGCACTGCCTTCATCCTTGCCAGTACTTCCAAAACCCCGAGTAGAGACACATAACATGCTTCCTGATTCTCAGCCAGCTTTCATGGAAAAAGAGCCAATGACTAGGCCTCTAACTCATTCAAGCCATTTAAATCCCAGTGGAGCAGTTGGGCACATGTTTTCATCTTCCCCTGGATTTTTAAATGATCTTCATCACTCATCCCTTTCACCTCATGAAAAACACCCTAGAAATGCTCATTTCATTTCACAGTCATCAAGTAACATAGTTTCATTGCCATTTTCATGTTCTTCAAACGCTGGTCCACTTCCTTCTACAACTCCACGccattattttaaagaaaacagTGTTTCCTGGCAAACTGAATCACTGCCAAGCTTTCTCGATTTTCCTGTAAATACAAACCTTGAGAATAGTCAAGCAGAAAGGGGCGCCTGCACTATCATGGGATCTGAGGAGTACGGCAAGCAAAATGATTGGCAAGAGTGGGCTGACCAACTTATCAGTGATGATGAGACTTTGACCTCTAATTGGAATGACCTTCTTACTGACAATATTCAGGACATTGAACCAAAGGTTAAGGTTTTAAAATCATCTTCAAATGTTCCAGGACACCAGTCCCAATGTCAACAGCAACTTCCTGCTCCATCCAGAGACAATAGCAGTGGTGCGCCTCCCTCTTCCTCAGCAAATTCTGCTCCTACCAAGCCACGGATGCGTTGGACACCAGAGCTCCATGAAGCCTTTGTGGAGGCTGTCAACCAACTTGGAGGCAGTGAAAGAGCTACCCCTAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGATTAACTATATATCATGTTAAAAGCCACTTGCAGAAATACAGGACAGCTAGATATAGACCGGAACCATCTGAAGGATCCTCAGAGAAAAGACTAACTTCCATTGAAGATATTCCTTCTCTAGGCTTGAAAACTGGTATTGAGATCACTGAAGCTCTGCGAATGCAAATGGAGGTTCAGAAGCAGTTGCATGAACAACTTGAGattcAAAGAAATCTACAGTTGCGAATAGAAGAACAAGGAAGGTGCCTCCAGATGATGTTTGAGAAGCAGTGCAAATCTGGCACTGAGAAGAAGGCTTCGTCATCTACCGTGGAGAATCCATCTGGAGTGTCTTCAGATATTATCAAAGATTGTGCTGCCAAAAGTGaaaaggaagcctcccaagtgGACAACCATGGAATGTCAGGATGTGACCAAGCTAATGGCAGTACTAGAGTTGAGGAAAACACTGTGGAAGCCGGGAGGAAGGATGATGGTCCTGAAAGTCAAGCTTCTGAGAATCCCAAGCAACATGATGCTGAAGATGGTGCTCAAGCCTCAAAGCGGCAAAGGACAGACGAGTAA 1458 0.43 MEARTASSIERSSSKQLSNMGMSSALPSSLPVLPKPRVETHNMLPDSQPAFMEKEPMTRPLTHSSHLNPSGAVGHMFSSSPGFLNDLHHSSLSPHEKHPRNAHFISQSSSNIVSLPFSCSSNAGPLPSTTPRHYFKENSVSWQTESLPSFLDFPVNTNLENSQAERGACTIMGSEEYGKQNDWQEWADQLISDDETLTSNWNDLLTDNIQDIEPKVKVLKSSSNVPGHQSQCQQQLPAPSRDNSSGAPPSSSANSAPTKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPEPSEGSSEKRLTSIEDIPSLGLKTGIEITEALRMQMEVQKQLHEQLEIQRNLQLRIEEQGRCLQMMFEKQCKSGTEKKASSSTVENPSGVSSDIIKDCAAKSEKEASQVDNHGMSGCDQANGSTRVEENTVEAGRKDDGPESQASENPKQHDAEDGAQASKRQRTDE 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3383 485 MobiDBLite consensus disorder prediction 430 446 - -
Sto13g3383 485 Coils Coil 347 367 - -
Sto13g3383 485 Pfam MYB-CC type transfactor, LHEQLE motif 344 391 IPR025756 -
Sto13g3383 485 Gene3D - 258 317 - -
Sto13g3383 485 Pfam Myb-like DNA-binding domain 261 312 IPR001005 -
Sto13g3383 485 MobiDBLite consensus disorder prediction 417 485 - -
Sto13g3383 485 MobiDBLite consensus disorder prediction 1 26 - -
Sto13g3383 485 SUPERFAMILY Homeodomain-like 257 313 IPR009057 -
Sto13g3383 485 MobiDBLite consensus disorder prediction 220 261 - -
Sto13g3383 485 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 259 313 IPR006447 GO:0003677
Sto13g3383 485 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 256 316 IPR017930 -
Sto13g3383 485 MobiDBLite consensus disorder prediction 222 259 - -
Sto13g3383 485 MobiDBLite consensus disorder prediction 1 44 - -
Sto13g3383 485 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL4-RELATED 25 483 - -
Sto13g3383 485 MobiDBLite consensus disorder prediction 447 485 - -
Sto13g3383 485 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 25 483 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3383 Sto-Chr13 37104301 37107734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3383 1 423 G2-like Transcription Factor Family AT4G28610 48.848 1.08e-103 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Sto13g3383 Myb_DNA-binding 9.1e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3383 - - gmx:100810560 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0746 8 4708205 4712016 Sto13g3383 13 37104301 37107734 CCT
Sto13g4000 13 40791797 40796457 Sto13g3383 13 37104301 37107734 CCT
Sto13g3383 13 37104301 37107734 Sto13g3383 13 37104301 37107734 ECH
Sto8g0746 8 4708205 4712016 Sto13g3383 13 37104301 37107734 ECH