Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3370 ATGCACAGCGCTTCTTCTAGTGACTCCATGCTCACCGAGTCTAAGGACGATAACTTGGTGCTCTCTTCCGAGGATTCCTCATGCCCTGATGAGTCCGAGCTTGAATTGGGTCTTGGGGCCAACGTAACAGCTGGCACCAAGAGAACTGCTGATTCTGTTGCTGCTACAAACGGTTCTGGTCAGGTTGTTGGATGGCCTCCTCTTGGAGCATATAGAATGAACAGCTTTAATAATAACCATGCAAAATCACCAGCCACTGAAGGATTCAACTCTATGGTTGAAAAGGGTAAGAACAATCATACAATGTTAATGAAGACTACTGACAATGGCAATGGTAAAAACAAGATTTGTGCCAAAGAAAATGCACACATCAGGAGTTCCCTATTCGTGAAGGTAAATATGGATGGGATACCGATTGGAAGGAAAGTTGATCTGAGTGCTCATAGCTCCTATGAATCATTAGCACGATATTTGGAGGATATGTTTAATGAACCAACTCCAGTTGTCACTTGCAAGGCAGGACCAAACGGGGAGGATAGGGACAAAGTAGTTGGAGCAGAAAAGAGACAGCCAAGATTGCTGGATGGATCTTCCAAGTTTGTGCTGACTTATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGAGATGTTCCTTGGGGGATGTTCCTTGGCTCTGTTAGGAGGCTAAGAATCATGAGGACATCTGAGGCAAATGGACTTGCACCAGGATTGGAGGAAAAGAACAGCAGACAGAGAAGTGAACGCATATAG 771 0.4488 MHSASSSDSMLTESKDDNLVLSSEDSSCPDESELELGLGANVTAGTKRTADSVAATNGSGQVVGWPPLGAYRMNSFNNNHAKSPATEGFNSMVEKGKNNHTMLMKTTDNGNGKNKICAKENAHIRSSLFVKVNMDGIPIGRKVDLSAHSSYESLARYLEDMFNEPTPVVTCKAGPNGEDRDKVVGAEKRQPRLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFLGSVRRLRIMRTSEANGLAPGLEEKNSRQRSERI 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3370 256 PANTHER AUXIN-RESPONSIVE PROTEIN IAA11 41 247 - -
Sto13g3370 256 MobiDBLite consensus disorder prediction 1 36 - -
Sto13g3370 256 SUPERFAMILY CAD & PB1 domains 123 232 - -
Sto13g3370 256 Gene3D - 122 246 - -
Sto13g3370 256 ProSiteProfiles PB1 domain profile. 127 236 IPR000270 GO:0005515
Sto13g3370 256 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 41 247 IPR003311 GO:0005634|GO:0006355
Sto13g3370 256 MobiDBLite consensus disorder prediction 1 27 - -
Sto13g3370 256 Pfam AUX/IAA family 47 242 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3370 Sto-Chr13 37053271 37055652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3370 120 242 B3 DNA Binding Superfamily AT1G59750 33.333 1.05e-12 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Sto13g3370 AUX_IAA 4.4e-59 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3370 K14484 - gmx:100779400 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0757 8 4765430 4766123 Sto13g3370 13 37053271 37055652 CCT
Sto13g3370 13 37053271 37055652 Sto13g3370 13 37053271 37055652 ECH