Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3360 ATGGCGCTTTGGATGGAAAAGGGTTCTGAGCCCTTAACCCAAAGCGAGAAAGCAGACCTCGATGCTATTTCTGCACTTAAAGAGTCTGCTGCCATTGAACTTAAgGAAAAGGGAAACCAATATGTCAAGATGGGTAAAAAGCATTACTCTGATGCTATTGATTGTTACTCAAGGGCAATAGATCAAAAAGTCTTGAGTGACTCTGAGAACTCGGTTCTTTTTGCAAATAGAGCACACGTAAATTTGCTGCTAGGAAATTGTAGGCGTGCTCTGACAGATGCTGATGAGGCAATTAAGTTGTGCCCCTCAAATATAAAGGCAATTTATAGAGCTGCCAAAGCATCTCTTTCATTAAATTTGTTGGCTGAAGCACAATCCTATTGTCAAAAAGGCCTTCAGTTAGACCTCAATaatgaagaattgaagaagcTAGGCCAGCAGATTGATCTAAAGAAATCAGAGCAGGAAAAGCATGAAGCTGAAGTCTCCAAAGCTGTTACAGAGACCAAGGAACTTGTGTCTGCAATTGAAACTAGAGGCTTGAAGATTGGAAAGGCAATGTTTCAAGAACTTACTGGACTAAAAAAGCCAGTActagacaaaaataatattcttcATTGGCCTGTTCTCCTCCTTTATGCAGAGGTTATGTCCAGTGACTTCATTGAGGATTTCTGTGAGACTGACATGTTCACAGTTCATCTTGACATGATATCCTTTCCAATAAATTGCCTATCAAACATATTTGCAGAAGATCAGCCACTGCCTTGGGATGATAAAAACAATTACAAACGTGAATATGTTGAATTATATTATGAGTATCAGGCTGGTTCTGGGGTCTGTCTATCAAAGGCAAAACTTCTTCATTATTTATTAGAGGGGACTGCAGCATCTCATTTGGAAAGTGTCGGTGATGAAGAGAAAGAGGCAGTCAATGAGACCAACCACGCCATCAGGGGAACTCCTAAATGGATTAAAGTAAATGAAAGGACAACGCTCCACGATGTTCTGAAAGaccccaattttatcattcCCGGCATCCCAGTGTTCTATGTTGTTTCAAAGCGATCCAGCTTTTATGGAAAGTTCAAAACTGGACAATGGGCTCCTCCAAGCATATGA 1122 0.3877 MALWMEKGSEPLTQSEKADLDAISALKESAAIELKEKGNQYVKMGKKHYSDAIDCYSRAIDQKVLSDSENSVLFANRAHVNLLLGNCRRALTDADEAIKLCPSNIKAIYRAAKASLSLNLLAEAQSYCQKGLQLDLNNEELKKLGQQIDLKKSEQEKHEAEVSKAVTETKELVSAIETRGLKIGKAMFQELTGLKKPVLDKNNILHWPVLLLYAEVMSSDFIEDFCETDMFTVHLDMISFPINCLSNIFAEDQPLPWDDKNNYKREYVELYYEYQAGSGVCLSKAKLLHYLLEGTAASHLESVGDEEKEAVNETNHAIRGTPKWIKVNERTTLHDVLKDPNFIIPGIPVFYVVSKRSSFYGKFKTGQWAPPSI 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3360 373 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 1 369 - -
Sto13g3360 373 SMART tpr_5 71 104 IPR019734 GO:0005515
Sto13g3360 373 SMART tpr_5 31 66 IPR019734 GO:0005515
Sto13g3360 373 SMART tpr_5 105 138 IPR019734 GO:0005515
Sto13g3360 373 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 1 369 - -
Sto13g3360 373 Pfam Cns1/TTC4 Wheel domain 200 280 IPR044059 GO:0051879
Sto13g3360 373 Gene3D Tetratricopeptide repeat domain 24 179 IPR011990 GO:0005515
Sto13g3360 373 SUPERFAMILY TPR-like 24 158 IPR011990 GO:0005515
Sto13g3360 373 Coils Coil 141 161 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3360 16 160 Calmodulin-binding Proteins AT3G25230 32.692 1.09e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3360 K24927 - gmx:100783179 580.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3360 13 36974223 36977350 Sto13g3360 13 36974223 36977350 ECH