Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3358 ATGGCTACTCAAGGTCAAGTCATTACTTGCAAAGAGGTTTTGGTTTTGGCTCAACTTTGCATGTGTGAAGCGGCGGTGGCCTGGGAACCCAACAAGCCATTGACTATCGAAGACGTTCAGGTGGCTCCGCCGCAGGCTGGCGAGGTTCGAGTCAAGATTCTCTTCACTGCTCTCTGTCACACCGATGCTTACACTTGGAGCGGAAAGGATCCAGAAGGTCTCTTCCCGTGTATTCTTGGTCATGAAGCTGCTGGGATTGTTGAAAGTGTTGGAGAAGGTGTTACAAATGTTCAGACTGGAGATCATGTCATTCCCTGTTACCAGGCTGAATGTGGAGAATGCAAGTTTTGCAAATCAGGCAAAACAAACCTCTGTGGCAAAGTACGTTCTGCCACTGGAGTTGGTGTCATGCTGAGTGACCGCAAGAGTCGTTTCTCTGTTAATGGAAAGACCATCTATCATTTTATGGGAACCTCAACATTTAGTCAATACACTGTTGTTCATGATGTTAGTGTAGCTAAGATTGACCCAAAAGCTCCATTAGAGAAAGTTTGTCTTCTTGGATGTGGTGTTCCAACTGGTCTTGGAGCTGTCTGGAACACTGCAAAGGTGGAACCAGGGTCCATTGTAGCTATTTTTGGCCTTGGAACTGTTGGGCTTGCTGTTGCAGAGGGTGCTAAAGCTGCTGGCGCATCACGAATTATTGGCGTAGATCTTGACAGCAAAAAGTTTGATATAGCAAAGAATTTCGGAGTCACTGAATTTATTAATCCAAAAGAGCAAGAGAAACCAATTCAGCAGGTCATAGTTGATCTCACGGATGGTGGAGTGGATTATAGTTTTGAGTGCATCGGAAATGTCTCAGTGATGAGGGCTGCATTGGAATGCTGTCATAAGGGATGGGGGACATCAGTTATAGTGGGTGTTGCAGCGTCAGGGCAAGAAATATCAACTCGCCCGTTCCAGTTGGTGACTGGTCGTGTTTGGAAAGGAACCGCTTTTGGTGGCTTCAAGAGCAGGTCACAAGTGCCTATGCTTGTGGACAAGTACTTGAACAAGGAAATCAAGATTGATGAGTACATCACCCACAATTTAACTCTTGCGGAGATCAACAAGGCATTTGATCTGATGCACGAAGGGGGATGTCTCCGTTGTGTGCTTTCAGTACATGACTGA 1176 0.4609 MATQGQVITCKEVLVLAQLCMCEAAVAWEPNKPLTIEDVQVAPPQAGEVRVKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTNVQTGDHVIPCYQAECGECKFCKSGKTNLCGKVRSATGVGVMLSDRKSRFSVNGKTIYHFMGTSTFSQYTVVHDVSVAKIDPKAPLEKVCLLGCGVPTGLGAVWNTAKVEPGSIVAIFGLGTVGLAVAEGAKAAGASRIIGVDLDSKKFDIAKNFGVTEFINPKEQEKPIQQVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPMLVDKYLNKEIKIDEYITHNLTLAEINKAFDLMHEGGCLRCVLSVHD 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3358 391 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 80 94 IPR002328 GO:0008270|GO:0016491
Sto13g3358 391 Gene3D - 194 332 - -
Sto13g3358 391 Pfam Zinc-binding dehydrogenase 218 339 IPR013149 -
Sto13g3358 391 Pfam Alcohol dehydrogenase GroES-like domain 47 174 IPR013154 -
Sto13g3358 391 CDD alcohol_DH_class_III 22 387 IPR014183 GO:0006069|GO:0008270|GO:0051903
Sto13g3358 391 PANTHER S-(HYDROXYMETHYL)GLUTATHIONE DEHYDROGENASE 3 389 - -
Sto13g3358 391 SUPERFAMILY GroES-like 19 209 IPR011032 -
Sto13g3358 391 PANTHER ALCOHOL DEHYDROGENASE 3 389 - -
Sto13g3358 391 Gene3D - 25 384 - -
Sto13g3358 391 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 180 353 IPR036291 -
Sto13g3358 391 SUPERFAMILY GroES-like 338 387 IPR011032 -
Sto13g3358 391 TIGRFAM adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 23 388 IPR014183 GO:0006069|GO:0008270|GO:0051903
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3358 Sto-Chr13 36966864 36969900 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3358 20 343 Monolignol Biosynthesis Gene Families AT1G72680 27.356 2.97e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3358 K00121 - mnt:21398977 713.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3358 13 36966864 36969900 Sto13g3358 13 36966864 36969900 ECH