Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3342 ATGAATCACTGTGTTCCAGATTTCGAAATCCAAATGGAGGACCATCAATACCCAATACCCTTCTCTTCTGCCTTCCCTCACCCTAACAAGCCAGACGACGGAATCATGGAGCTCCTTTGGCAAAACGGTCCTGTCGTTTTGCCCAGCCAGACCCAGCGCCCTCTCAGAAAACCGCCGCCGCTGGCGAGGGAGATTCCACCAGAAAACTACCACAATCAACATCTGTTCATGCAAGAAGACGAAATGGCTTCCTGGCTTCACTATCCTATCGTTGATGATGACGATTCTCCCTTGGATCACAATTTCTGCGCTGATTTGCTCTATTCGCCTCCCACCGCAAACAACGACAGTACAATGCAATCCAATGCCCGTACATCTCAGGTCACCGAGCTCCGGAAGCCGTCGAGTTCCGTGGCTCCCCGGCCACCGATTCCGCCGGCAAGGAGGCCGGAGCAGGTACATGAATCCGTGCACCTCTCGAAGCACAATGTGAGAGTTGAACAAGGGCGGTCCAGTTCCAGGATCGCGGCGAGAGAATCGACGGTGGTGGATTCATGCGAAACTCCTGCTGCTGCTACGGCGGCGGCATCGGCTTCCAGAGTTTCGGAGACTGTAAGAAGCTTGACAGAGCCAACGGAAGGAGACGCCTGGCGCGGGAGCATGAGCACCGCCGGAGTAACGGCGCCTTCGACGACGACCGCCGGCGTAGAAACAGGAGGGAAGGAGGCGACGACGTGCGACACGACGGCGACATCATCGCCGGGAGGATCTAGTTGCAGTGCTGATGTGGCTGATCGGAAGCGGAAAGGCCGGGAAGCCGAGGACTCCGAGTGCCCCAGCGAGAAGGATTTGGATTATGAATCTGCCGAAGCAAAAAAACTAATTCGCAAGACGACGTCAACAAAGAGATCTCGTGCTGCAGAGGTCCATAACCTCTCGGAGAGGAAGCGTCGGGATAGAATTAATGAAAAGATGAGAGCTTTACAAGAACTTATTCCTCGGTGCAATAAGTCTGACAAAGCTTCAATGCTGGATGAAGCAATAGAATACTTGAAGTCATTACAGTTACAAGTGCAGATGATGTCCATGGGATGTGGTATGGTACCTATAAGTATGATGTATCCTGGAATGCAACAATATATGCCAGCAATggggatggggatggggatggAAATGGGAATGAATAGGGCAGTAATGTCATTTCCTAATATGTTAGCTGCTTCAGCTTTGCCAGCAGCAGCAGCTCATTTGGGACCAAGGTTCCCTGTGGCTCCTCTGCATATGCCCCATGTTGAGTTATCCAGAATGCAAGCAGCTAAGCAGTCTAGTAATATGCTTACCTCACTTCCTACATCTGATCCCACCCACTCACGGATCCCAAACCTTACTGATCCTTATCTCCAATACTTTGGTCCCCACCTCATCCAGTTTCAATTAATGCAGAATCAAGCAATGATCCAGCAAAATGTCAGCAAGTCGAGCACCAGTAGGGGACCTGAGGACCCAGAAAATCATCAGTCAGACGGGCCGAAACCAATTGATGTTGGATGCATAGTAGTATTTTGTACATGCAATGGCCGAGATGAAATCCAGAATCTCACATACAAACACAATGTTATGCAAGACTTGGTGGGTTTGAATGAGTTCTATAGAGTGAATACCTCCAGTTCAATAAGTATACTTGGAGGGGAAATTCTAGAGAAGAGCATTTGGGTGGACATGGACTTACATTCTCTGCATTTGGGGAACGATCAATACTGCAAATTAGTTCTTGAAGGGCTTTGTCATTCAAAGCGCTGCGAATCTCACTGGAAGAAGCTGCAGTTCCAAAATATCATAATCATACCTATAGCCTCTAGTTGGGCTTTTTGTAGCACCTCGCTGGGATCGTCAACAAGTAACGGTTCTAGTACATGTGATTCCAGAACTGCAGCTGATGAAGAGTACAGAAACCAACATCAACCCACCAAGGTCCTTGAGAGTCTGTTACCCACGATGAAGCAGATTGTGCATATTAATCTATCGCAGAGAATCAGCACAAACAAGAAAATTGGCCATGCCTACCTGGAAAATGTGTTTCCTTGTTTTGATATCAGGAAGAGGAAATTCTATCTTCCTGTCTATTCGACCTGGTCGCAGCAAAGCCGGATCAAGACTTCCAATTCTGTTGGTTGCAAGAATTACTTTTACATCTCCTCTTGA 2202 0.4791 MNHCVPDFEIQMEDHQYPIPFSSAFPHPNKPDDGIMELLWQNGPVVLPSQTQRPLRKPPPLAREIPPENYHNQHLFMQEDEMASWLHYPIVDDDDSPLDHNFCADLLYSPPTANNDSTMQSNARTSQVTELRKPSSSVAPRPPIPPARRPEQVHESVHLSKHNVRVEQGRSSSRIAARESTVVDSCETPAAATAAASASRVSETVRSLTEPTEGDAWRGSMSTAGVTAPSTTTAGVETGGKEATTCDTTATSSPGGSSCSADVADRKRKGREAEDSECPSEKDLDYESAEAKKLIRKTTSTKRSRAAEVHNLSERKRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPISMMYPGMQQYMPAMGMGMGMEMGMNRAVMSFPNMLAASALPAAAAHLGPRFPVAPLHMPHVELSRMQAAKQSSNMLTSLPTSDPTHSRIPNLTDPYLQYFGPHLIQFQLMQNQAMIQQNVSKSSTSRGPEDPENHQSDGPKPIDVGCIVVFCTCNGRDEIQNLTYKHNVMQDLVGLNEFYRVNTSSSISILGGEILEKSIWVDMDLHSLHLGNDQYCKLVLEGLCHSKRCESHWKKLQFQNIIIIPIASSWAFCSTSLGSSTSNGSSTCDSRTAADEEYRNQHQPTKVLESLLPTMKQIVHINLSQRISTNKKIGHAYLENVFPCFDIRKRKFYLPVYSTWSQQSRIKTSNSVGCKNYFYISS 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3342 733 Gene3D - 300 363 IPR036638 GO:0046983
Sto13g3342 733 Pfam Helix-loop-helix DNA-binding domain 309 355 IPR011598 GO:0046983
Sto13g3342 733 MobiDBLite consensus disorder prediction 111 134 - -
Sto13g3342 733 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 508 IPR031066 -
Sto13g3342 733 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 305 354 IPR011598 GO:0046983
Sto13g3342 733 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 303 374 IPR036638 GO:0046983
Sto13g3342 733 MobiDBLite consensus disorder prediction 488 511 - -
Sto13g3342 733 MobiDBLite consensus disorder prediction 195 209 - -
Sto13g3342 733 CDD bHLH_AtPIF_like 305 368 - -
Sto13g3342 733 MobiDBLite consensus disorder prediction 223 259 - -
Sto13g3342 733 MobiDBLite consensus disorder prediction 111 317 - -
Sto13g3342 733 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 508 - -
Sto13g3342 733 MobiDBLite consensus disorder prediction 262 317 - -
Sto13g3342 733 SMART finulus 311 360 IPR011598 GO:0046983
Sto13g3342 733 MobiDBLite consensus disorder prediction 151 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3342 Sto-Chr13 36823324 36830347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3342 1 360 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 42.216 6.01e-69 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto13g3342 HLH 4.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3342 - - gmx:100797225 529.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0783 8 4969318 4972253 Sto13g3342 13 36823324 36830347 CCT
Sto13g3342 13 36823324 36830347 Sto13g3342 13 36823324 36830347 ECH