Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3333 ATGGCGGCGGCGAGGCGTCTCCGTGATCTCCAAGCCCAACCGGGCAACAAGATCTGCGTCGATTGCTCTCAGAAGAATCCCCAATGGGCTTCCGTCTCCTACGGCGTCTTCATGTGTTTGGAGTGCTCCGGCAAGCACCGTGGCCTCGGTGTCCACATCTCCTTTGTCCGATCCGTTACTATGGATTCCTGGTCCGATATCCAGATCAAGAAAATGGAAGCCGGTGGCAACGACAAGCTCAACGCCTTTTTCGCCCAGTATGGAATTTCCAAGGAGACCGATATCGTTGCCAAGTATAATACCAATGCTGCAAACGTATATAGGGACCGAATTCAGGCCATCGCCGAGGGCCGACCATGGCGGGATCCACCGGTTGTGAAGGAAAGCATTAGCCAAGGCAAGAGTAAACCTCCGTTGCCGCAAAACAGTGGTGGAGGCAATTACAGGAATAGTGGAGGGTGGGATAGTTGGGACAACGATGATGGATTCAGATCTAACAATGATCTTAGGCGGAATCAGTCTACGGGTGATGTTAGGGCTGTGAATGGAGGTAGCGCGGGAAGCACACCCGTGAGGTCCAAGTCGACTGAGGATATCTATACGCGATCCCAATTGGAGGCCTCCGCTGCTAACAAAGAGTCCTTTTTCGCTCGGAAGATGGCGGAGAACGACTCAAGACCCGATGGGCTTCCGCCGTCACAAGGTGGCAAGTACGTAGGATTCGGATCTAGTCCCCCGCCGCCCCGGACTAGTAATCAGCAAAACGACTATTTGTCTGTTGTTTCTCAGGGACTTGGTAAATTATCATTGGTTGCTGCCTCTGCAGCTCAGTCTGCTGCTAGTGCTGTTCAGGCAGGCACGAAAGAGATTTCTGCCAAGGTAAAGGATGGTGGTTATGATCACAAAGTCAATGAAACTGTCACTGTTGTCACTCAGAAAACAACAGAGATTGGACAAAGGACATGGGGAATCATGAAAGGGGTCATGGCAATGGCTTCCCAGAAGGTTGATGAGTACACTAGAGATAACCCAAATTGGAGAAGTGATAATTGGCaacgaaatgaaaatgataGAAATGGTTACTATCAGGAATTCAATCAAGAAAACAAAGGCTGGAATTCTTCTACTAGAGGACAAGCTTCATCAGCTGGGCAGTTTAATACTCAACGAACTAGCTCTTGGGATGATTGGGACGACAATACTACTAGGAAGGAAGAACCAGCCAAAGGATCAGCTTCCCGGCAGTCTAATACTTATGGCTCTAGCTCTTGGGATGTCTGGGACCACAAAGAAACTAGGAGGGAAGAACCTTCTAAAGCATCGGCTGGCCATAACAATGATGGTTGGGCTGGCTGGGATGATGTCAAAGATGATGGATGTGATAATTTCTATGAGGGCGCATCTAATAAGAAAGCTGTTGGTCGAAATGGGAAATCAGATGCTGCCTGGGATGGAGGCTTTCTCTAA 1467 0.4888 MAAARRLRDLQAQPGNKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSDIQIKKMEAGGNDKLNAFFAQYGISKETDIVAKYNTNAANVYRDRIQAIAEGRPWRDPPVVKESISQGKSKPPLPQNSGGGNYRNSGGWDSWDNDDGFRSNNDLRRNQSTGDVRAVNGGSAGSTPVRSKSTEDIYTRSQLEASAANKESFFARKMAENDSRPDGLPPSQGGKYVGFGSSPPPPRTSNQQNDYLSVVSQGLGKLSLVAASAAQSAASAVQAGTKEISAKVKDGGYDHKVNETVTVVTQKTTEIGQRTWGIMKGVMAMASQKVDEYTRDNPNWRSDNWQRNENDRNGYYQEFNQENKGWNSSTRGQASSAGQFNTQRTSSWDDWDDNTTRKEEPAKGSASRQSNTYGSSSWDVWDHKETRREEPSKASAGHNNDGWAGWDDVKDDGCDNFYEGASNKKAVGRNGKSDAAWDGGFL 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3333 488 MobiDBLite consensus disorder prediction 368 395 - -
Sto13g3333 488 CDD ArfGap_ArfGap1 3 117 - -
Sto13g3333 488 SMART arf_gap_3 4 120 IPR001164 GO:0005096
Sto13g3333 488 MobiDBLite consensus disorder prediction 411 425 - -
Sto13g3333 488 MobiDBLite consensus disorder prediction 134 154 - -
Sto13g3333 488 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Sto13g3333 488 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Sto13g3333 488 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Sto13g3333 488 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Sto13g3333 488 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 411 487 IPR044519 GO:0005096|GO:0016192
Sto13g3333 488 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 417 IPR044519 GO:0005096|GO:0016192
Sto13g3333 488 Gene3D Arf GTPase activating protein 1 128 IPR038508 -
Sto13g3333 488 MobiDBLite consensus disorder prediction 450 464 - -
Sto13g3333 488 Pfam Putative GTPase activating protein for Arf 5 107 IPR001164 GO:0005096
Sto13g3333 488 MobiDBLite consensus disorder prediction 426 441 - -
Sto13g3333 488 SUPERFAMILY ArfGap/RecO-like zinc finger 5 111 IPR037278 -
Sto13g3333 488 MobiDBLite consensus disorder prediction 118 198 - -
Sto13g3333 488 MobiDBLite consensus disorder prediction 168 198 - -
Sto13g3333 488 MobiDBLite consensus disorder prediction 222 254 - -
Sto13g3333 488 MobiDBLite consensus disorder prediction 368 488 - -
Sto13g3333 488 MobiDBLite consensus disorder prediction 396 410 - -
Sto13g3333 488 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 411 487 - -
Sto13g3333 488 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3333 Sto-Chr13 36771809 36774615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3333 5 87 C2H2 Transcription Factor Family AT4G05330 51.190 8.92e-24 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3333 K12492 - gmx:100806519 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0794 8 5024167 5026702 Sto13g3333 13 36771809 36774615 CCT
Sto13g3333 13 36771809 36774615 Sto13g3333 13 36771809 36774615 ECH