Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3313 ATGAAGAGACGTGAGAGAGATAACGAAGCAAGAGAGACGAGCTTCTTGGACATAGCCAATTGTCTGATGCTACTGTCTCATACTCATACGAATTCCCACAGAATTAGGTCTTGTGCTGAATTCGAATGCAAGACTTGTAACCGCAAGTTTTCGTCGTTTCAGGCACTTGGTGGTCATAGGGCTAGCCACAAGAAGCCCAGGCTGGATGATCACGACGCCGAGCTCAAACCGCAGGCTAAACCCAAGATGCACGAGTGCTCCATTTGTGGTCTCAAGTTCTCTCTGGGACAAGCCCTCGGTGGTCACATGCGGAGGCATAGAGCAGCAGGCCACGACGTCGTTTCACAGGAAGGTGTGGCTATTGAAATAGCAGAAGCTGTACTCGAGGCCTTGAAAGGGGAATTTGCTGCTACTGTTGTCAATGCACCAATGGTTCCCGCAGAGGGGTATGGTAAGGGTAGTCTTAGCAATGGCTGTGGAGATGTTAATTTTGGCTCAAAAGTTATACGTTATGGAAAAACTAGTAAAACCATTGTTGCATCAAGGTCATCATATGCTCTGCCAAATAGCAGTTATAATGGAgcatataaagatatttttgaTGCCGGATCATTTTATTGA 621 0.4557 MKRRERDNEARETSFLDIANCLMLLSHTHTNSHRIRSCAEFECKTCNRKFSSFQALGGHRASHKKPRLDDHDAELKPQAKPKMHECSICGLKFSLGQALGGHMRRHRAAGHDVVSQEGVAIEIAEAVLEALKGEFAATVVNAPMVPAEGYGKGSLSNGCGDVNFGSKVIRYGKTSKTIVASRSSYALPNSSYNGAYKDIFDAGSFY 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3313 206 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Sto13g3313 206 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 106 IPR013087 -
Sto13g3313 206 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Sto13g3313 206 SUPERFAMILY beta-beta-alpha zinc fingers 41 106 IPR036236 -
Sto13g3313 206 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Sto13g3313 206 PANTHER ZINC FINGER PROTEIN ZAT5 3 123 - -
Sto13g3313 206 Pfam C2H2-type zinc finger 41 66 - -
Sto13g3313 206 Pfam C2H2-type zinc finger 84 108 - -
Sto13g3313 206 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 3 123 - -
Sto13g3313 206 Gene3D Classic Zinc Finger 38 106 - -
Sto13g3313 206 SMART c2h2final6 41 63 IPR013087 -
Sto13g3313 206 SMART c2h2final6 84 106 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3313 Sto-Chr13 36674197 36678356 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3313 3 109 C2H2 Transcription Factor Family AT2G37430 48.760 4.14e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto13g3313 zf-C2H2_6 3.7e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3313 - - aip:107648719 141.739