Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3308 ATGGAGACGCAGAGAATTATCGAGTTTCCGCATAAGAACATGGACAAGCGGCCCAGGAAAAGGCCTCGTTTAACATGGGATATGCCTCCtgctcttcctcctcctcaattaagTTATGGATTCTTCCAGGTTCTTCCTGCTATATATTGCAATCAGGAACTTGGGAATGGAGTGGTTCCAAATATTGCATATTCTTCCATGTTTTACAGGGGGGTGCCTCGCAATGGATCACCCCCTTGGAGACCTGATGATAAAGATGGACACTACGTTTTTGCTATTGGAGAAAATTTAACTTCACGATATAGGATTCTCAGTAAAATGGGTGAAGGCACATTTGGCCAAGTGTTGGAATGTTTTGACAATGAAAGGGAAGAAGTTGTGGCAATCAAAATTGTTCGCTCTATACACAAGTACCGTGAGGCTGCAATGATTGAAATTGATGTTCTGCAGAGGCTTGCCAGGCATGATATTGGCAATGCACGTTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTGTATTTGAGAAGCTTGGGCCAAGCTTATACGATTTTCTCCGCAAAAACAGCTATCGTTCTTTTCCCATTGATCTTGTTCGGGAGTTTGGCAGACAACTTTTGGAGTCTGTAGCATTTATGCATGATTTACACTTGATTCACACTGATTTGAAGCCAGAGAATATTCTTCTTGTCTCTTCCGACTATATTAAAGTGCCAGACTACAAGTTTCTAGCGCGGACCACAAAAGAGGGTTCCTATTTCAAGAACCTACCTAAGTCGAGTTCCATTAAACTCATTGATTTCGGGAGTACAACATTTGAACATCAGGACCACAGTTATGTGGTGTCAACTAGACACTATCGAGCACCAGAGGTTATCTTAGGTCTTGGGTGGAACTATCCTTGCGATCTTTGGAGTGTGGGTTGCATACTGGTTGAACTCTGCTCTGGAGAGGCTCTTTTTCAAACACACGAGAATCTGGAGCATCTTGCCATGATGGAGAGGGTTTTGGGGCCACTACCTCAACAAATGGTGGTCAGGGCTGATAGCCGACGAGCGGAGAAGTATTTTAGAAGGGGTGCACGATTGGGTTGGCCAGATAGTTCAACTTCAAGAGAAAGCATGAGGGCAGTTTGGAAATTGCCTCGCTTACCGAACCTTATAATGCAGCACGTTGATCATTCTGCTGGCGATTTGATTGATCTTTTGCAAGGACTTCTCCGATACGACCCTTCAGAACGGATCAAAGCAAGGGAAGCATTAAGACATCCCTTCTTCACAAGAGATCCAAAACGATATGGTTACCCCCTATAA 1326 0.4276 METQRIIEFPHKNMDKRPRKRPRLTWDMPPALPPPQLSYGFFQVLPAIYCNQELGNGVVPNIAYSSMFYRGVPRNGSPPWRPDDKDGHYVFAIGENLTSRYRILSKMGEGTFGQVLECFDNEREEVVAIKIVRSIHKYREAAMIEIDVLQRLARHDIGNARCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVREFGRQLLESVAFMHDLHLIHTDLKPENILLVSSDYIKVPDYKFLARTTKEGSYFKNLPKSSSIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPQQMVVRADSRRAEKYFRRGARLGWPDSSTSRESMRAVWKLPRLPNLIMQHVDHSAGDLIDLLQGLLRYDPSERIKAREALRHPFFTRDPKRYGYPL 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3308 441 CDD PKc_CLK 88 430 - -
Sto13g3308 441 Gene3D Phosphorylase Kinase; domain 1 88 181 - -
Sto13g3308 441 Gene3D Transferase(Phosphotransferase) domain 1 155 430 - -
Sto13g3308 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Sto13g3308 441 ProSiteProfiles Protein kinase domain profile. 101 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g3308 441 SMART serkin_6 101 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g3308 441 PANTHER BNAA07G37640D PROTEIN 1 433 - -
Sto13g3308 441 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 433 - -
Sto13g3308 441 Pfam Protein kinase domain 101 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto13g3308 441 SUPERFAMILY Protein kinase-like (PK-like) 88 436 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3308 Sto-Chr13 36641389 36645117 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3308 92 436 Core Cell Cycle Gene Families AT1G76540 26.257 2.57e-32 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Sto13g3308 Pkinase 3.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3308 K08287 - tcc:18597826 820.076