Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3302 ATGGGAAACGCACACGCCCATCGCAAACACCGTAACTCCTTTCCCCAAAACCCCACACCTCCCCCCTCTTATAAATATGCTTCATCTCCTCACCTTCATATGACCCACAATCAGATTTCCTCCAAAATGTGGCCTTTGCCTTATTCTCATGTCGATCACACTTTGCGAGCTCTTGCTGCTCAAGCTGAAGGCTTTGGTCGATTGGCAATCGGTGGCCTTCATGGTCCCCTTTATCATGTTACTACTTTAGCAGATGATGGACCAGGATCACTCCGCTATGGGTGTCGCAGGAAAGAACCATTGTGGATTGTTTTTGAGGTTTCAGGCACTATTCATCTTTCATCTTACTTGACTGTGTCATCTTACAAGACTATTGATGGCCGGGGCCAAAGGATTAAACTCACTGGAAAGGGTTTGAGGCTGAAGGAATGTGAACATGTAATAATTTGCAACTTAGAATTAGAAGGTGGTAGAGGGCCTGATGTTGATGGCATTCAGATCAAACCTAATTCAAAGCACATATGGATAGATCGTTGCAGCCTCCGTGATTTTGATGACGGACTGATAGATATCACTCGAGGAAGCACAGATATTACTATTTCCAGATGTCACTTTTCTCAGCATGACAAGACAATACTTATTGGGTCAGATCCCTCTCACATCGATGATAGATGCATGAGGGTCACCATTCACCATTGTTTTTTTGATGGGACGAGACAACGGCATCCTCGAGTTAGATATGCAAAAGTACATCTGTACAATAATTACACCAGAAACTGGGGCATATATGCTGTTTGTGCTAGTGTGGAATCACAGGCAGCAGACAAGGAGGCAGCAGCAAGTGGTCACATAAGGTCAGAAGGAGACGTGTTTGTGAATGGAACTCAGGCAGGGTTAATGACTGAGAATGTGGGATGTACCATGTTTCATCCTAGTCAACACTATACCACGTGTACTGTTGCTCCTCCTACGGACGATCTTAAACAGCTTCTTCATCAATTCACCGGATGGCAATGTGTTGCTCGCCCGCCAGATCAACCATTGGTTGCATAG 1053 0.4501 MGNAHAHRKHRNSFPQNPTPPPSYKYASSPHLHMTHNQISSKMWPLPYSHVDHTLRALAAQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLRYGCRRKEPLWIVFEVSGTIHLSSYLTVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLELEGGRGPDVDGIQIKPNSKHIWIDRCSLRDFDDGLIDITRGSTDITISRCHFSQHDKTILIGSDPSHIDDRCMRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVESQAADKEAAASGHIRSEGDVFVNGTQAGLMTENVGCTMFHPSQHYTTCTVAPPTDDLKQLLHQFTGWQCVARPPDQPLVA 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3302 350 Pfam Pectate lyase 117 269 IPR002022 -
Sto13g3302 350 PANTHER PECTATE LYASE 18-RELATED 41 342 IPR045032 GO:0030570
Sto13g3302 350 SMART amb_all 108 297 IPR002022 -
Sto13g3302 350 Gene3D - 42 331 IPR012334 -
Sto13g3302 350 PRINTS Pollen allergen Amb family signature 61 78 IPR018082 -
Sto13g3302 350 PRINTS Pollen allergen Amb family signature 116 132 IPR018082 -
Sto13g3302 350 PRINTS Pollen allergen Amb family signature 186 207 IPR018082 -
Sto13g3302 350 PANTHER PECTATE LYASE 41 342 - -
Sto13g3302 350 SUPERFAMILY Pectin lyase-like 61 340 IPR011050 -
Sto13g3302 350 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3302 Sto-Chr13 36596249 36598730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3302 83 345 Polysaccharide Lyase AT3G55140 69.580 5.72e-148 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3302 K01728 - fve:101312551 555.058