Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3274 ATGAACTCCACCACTTCCAATTCTCAATCAATGGCGACCTCCACGCCCACTGATGGGTCTGGAAAGAAGGTGAGAAAGCCCTACACTATTACGAAGTCAAGGGAGAGCTGGACTGAGGAAGAGCACGACAAGTTTCTCGAAGCTCTTCAACTATTTGACAGAGATTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACAGTTATTCAGATTCGAAGCCATGCCCAGAAGTACTTCTTAAAAGTTCAAAAGAATGGGACAATAGCACATGTGCCTCCTCCTCGCCCTAAGCGCAAAGCTGCTCATCCTTACCCACAAAAGGCACCAAAGAACGTTTTGGTTCCATTGCCAGCATCGATGGCTTATGCTTCTTCAGCAAATACCCTTGCACCGGAACTTTCCACCACTTATTATGTATATTACGTTACTGATTCAGCTGATATTGGATCAAAGGGGATAGCAAGGATTAGCAACAGCAGTCTTAGTGGTGTTGGAAACTCTGCTAGAATGCTACAAAGTTCTGAGATACCAAAGCAAGGGAAACAAGCTCCAGTTCTTCATGGTTTACCGGACTTTGCTGAGGTTTATGGCTTTATTGGAAGTGTTTTTGATCCAGATACAAAAGGCCATGTCcagaagctgaaggaaatgGACCCTATAAATTTTGAAACTGTTTTGTTGTTGATGAGAAACCTCACTGTCAACTTGTCCAGCCCTGACTTTGAGCCCTATAAGAAGGTCTTGTCCTCATATGATGCCAATACCAAGACAGTAGAAGTTGCTGCCAAAAAGGAAACAAATGATCTATCATGTGGGTCAAATATGGAACGATGCCGTTTGCTCAGCCACCAGCAAGCAAGGCTTAGAAGTGTCTTGCCCTTGCTGAGAACTGATGCTTGTAAATTTGACAAATATGCGTTTGTAACCACAGCCTCAAGAATATATTAG 948 0.4209 MNSTTSNSQSMATSTPTDGSGKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTIAHVPPPRPKRKAAHPYPQKAPKNVLVPLPASMAYASSANTLAPELSTTYYVYYVTDSADIGSKGIARISNSSLSGVGNSARMLQSSEIPKQGKQAPVLHGLPDFAEVYGFIGSVFDPDTKGHVQKLKEMDPINFETVLLLMRNLTVNLSSPDFEPYKKVLSSYDANTKTVEVAAKKETNDLSCGSNMERCRLLSHQQARLRSVLPLLRTDACKFDKYAFVTTASRIY 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3274 315 SMART sant 33 81 IPR001005 -
Sto13g3274 315 MobiDBLite consensus disorder prediction 1 20 - -
Sto13g3274 315 Gene3D - 37 84 - -
Sto13g3274 315 CDD SANT 36 79 IPR001005 -
Sto13g3274 315 ProSiteProfiles SANT domain profile. 32 85 IPR017884 -
Sto13g3274 315 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 32 81 IPR006447 GO:0003677
Sto13g3274 315 Pfam Myb-like DNA-binding domain 34 79 IPR001005 -
Sto13g3274 315 PANTHER SWI/SNF COMPLEX-RELATED 152 266 - -
Sto13g3274 315 PANTHER SWI/SNF COMPLEX-RELATED 3 134 - -
Sto13g3274 315 SUPERFAMILY Homeodomain-like 28 84 IPR009057 -
Sto13g3274 315 MobiDBLite consensus disorder prediction 1 36 - -
Sto13g3274 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 83 IPR017930 -
Sto13g3274 315 ProSiteProfiles Myb-like domain profile. 29 79 IPR001005 -
Sto13g3274 315 PANTHER PROTEIN REVEILLE 8 3 134 - -
Sto13g3274 315 PANTHER PROTEIN REVEILLE 8 152 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3274 Sto-Chr13 36449201 36453575 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sto13g3274 Myb_DNA-binding 4.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3274 - - gmx:100797466 421.779