Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3273 ATGGCGGCAGCAGCTCGTCCCCTTGTCAGTGTCCAAGCCATTGAGGGCGATATGGCCACCGATGAAGCCCCAACCCTTCCACTCCCGGATGTCATGAAGGCAGCGATTCGACCCGATATCGTCACCTTCGTTCACTCCAACATTTCCAACAACAGTCGCCAACCCTACGCCGTCAGCAAGCGCGCCGGTCATCAGACTTCCGCCGAATCATGGGGCACCGGTCGTGCCGTGTCTCGTATTCCCCGTGTCCCCGGCGGTGGTACCCACCGAGCAGGTCAGGCAGCTTTTGGTAATATGTGTCGTGGTGGACGAATGTTTGCTCCGACCAAGATTTGGCGTCGCTGGCACCGCAAGATCAATGTCAACCAGAAGCGTTACGCTGTTGTTTCTGCCATTGCTGCCTCCGCAATTCCTTCTCTTGTTATGGCTCGTGGTCACAGAATTGAGTCCGTGCCGGAAATGCCTTTGGTGATAAGTGATTCTGCTGAAGGTGTTGAGAAAACTAAGGAAGCTATCAAGGTGCTGCAGAAGATAGGTGCTTTTCCCGACGCTGAGAAGGCAAAGGACAGCCATGGCATCCGACCTGGTAAGGGAAAAATGAGAAATCGCCGATACATTTCTCGCAAGGGTCCTCTGATCGTGTATGGAACCGAGGGAGCTAAGGCTGTGAAAGCTTTTAGGAATATTCCTGGTGTTGAGATCGCGAATGTGGAGAGATTGAATCTTCTTAAACTCGCTCCTGGTGGCCATCTTGGTAGATTTGTTATTTGGACTAAGTCTGCTTTTGAGAAGTTGGATTCGATTTATGGGTCATTCGATAAGCCATCAGAGAGGAAGAAAGGGTTTCTGCTTCCAAGGGCCAAGATGGTTAATTCTGACTTGGCAAGGATCATTAACTCTGATGAAATCCAGTCTGTTGTGAGGCCCATAAACAAGCAAGTCAAGAGGGCACCTCTCAAGAAGAACCCGCTCAAGAATCTCAATGTTATGTTGAAGTTGAATCCGTATGCTAAAACTGCAAAGAGAATGGCTCTTCTTGCGGAGGCAGAGCGTGTAAAAGCAAAGAAAGAGAAGCTTGATAAGAAGAGGAAGTCCGTCTCTAAGGAGGAGGCTTCTGCTATAAAGGCTGCAGGAAAAGCATGGTACCAAACCATGGTGTCCGATTCTGATTACACAGAATTTGAGAATTTCTCTAAGTGGTTGGGTGTTTCTCAGTGA 1218 0.4934 MAAAARPLVSVQAIEGDMATDEAPTLPLPDVMKAAIRPDIVTFVHSNISNNSRQPYAVSKRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAIPSLVMARGHRIESVPEMPLVISDSAEGVEKTKEAIKVLQKIGAFPDAEKAKDSHGIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNIPGVEIANVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFDKPSERKKGFLLPRAKMVNSDLARIINSDEIQSVVRPINKQVKRAPLKKNPLKNLNVMLKLNPYAKTAKRMALLAEAERVKAKKEKLDKKRKSVSKEEASAIKAAGKAWYQTMVSDSDYTEFENFSKWLGVSQ 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3273 405 Coils Coil 342 369 - -
Sto13g3273 405 MobiDBLite consensus disorder prediction 55 73 - -
Sto13g3273 405 MobiDBLite consensus disorder prediction 55 90 - -
Sto13g3273 405 SUPERFAMILY Ribosomal protein L4 20 267 IPR023574 GO:0003735|GO:0005840|GO:0006412
Sto13g3273 405 Pfam 60S ribosomal protein L4 C-terminal domain 280 352 IPR025755 -
Sto13g3273 405 Pfam Ribosomal protein L4/L1 family 27 266 IPR002136 GO:0003735|GO:0005840|GO:0006412
Sto13g3273 405 PANTHER BNAC03G35890D PROTEIN 2 405 - -
Sto13g3273 405 Gene3D - 3 308 IPR023574 GO:0003735|GO:0005840|GO:0006412
Sto13g3273 405 PANTHER 60S RIBOSOMAL PROTEIN L4 2 405 IPR045240 -
Sto13g3273 405 ProSitePatterns Ribosomal protein L1e signature. 120 146 IPR013000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3273 Sto-Chr13 36445809 36447536 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3273 2 405 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 82.921 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3273 K02930 - gmx:100779764 721.079