Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3272 ATGTTGGATCTCAATCTAAGCGTCGCTTCATCTGATTCTGCGTCCGCTTCCGCCGATATGGTTCTCCACTCGATTCCGCCACTTTCTGCTACCCAAAGGGATAGCTCTGCTGGGAGCTTAAATTCCTCCGTCGTCAATGCGGATGCCTCCACCAACACTTGTGACGGTGATTCTTGCTTTTTTGCCGATGCTTTTGCTTATTATAACTTCGGTATATTGAAGAAGAACGCCGTAGATGATGGCGCCAGCTCTGAAGCAGTTGATATTTCCCAAGCTGAAGGTGGCTCTATTCGGACTATCCAGCTTTTTCCGGTATCCAGTGCCGGATATAACGATTTGACTCATGAGTTGGAAATCGGTCATCGGTTTCCGGATTCGTCTTCAACCAAAGGTTGGTTGGATTTCTCGCACAAGGAGATAGGCTGCGGTGGCGAGCCCGAGCTGAGTAAGCTATCTTTACTGCAGCAGAGACCGCAGGTGAAGAAGAGCCGGCGGGGACCGAGGTCGCGGAGCTCGCAGTATCGTGGCGTTACCTTCTATCGAAGAACGGGAAGATGGGAATCACATATTTGGGATTGTGGGAAACAAGTGTACTTGGGTGGATTTGATACAGCGCATGCTGCGGCAAGGGCGTATGATCGAGCTGCAATAAAGTTCCGTGGCATTGATGCAGATATCAATTTTAACATCATTGATTATGATGATGACATAAAGCAGATGAGTAACTTTTCAAAGGAAGAGTTTGTGCATATTCTGCGACGACAGAGCACTGGTTTTTCTAGAGGAAGCTCAAAATACAGGGGAGTTACTCTGCATAAATGTGGGCGATGGGAAGCTCGCATGGGACAGTTTCTTGGGAAAAAGTATATATATCTTGGGCTATACGATAGCGAGATAGAGGCTGCAAGGGCATATGATAAAGCTGCTATAAAATGCAATGGAAGGGAAGCGGTTACAAACTTTGAGCCGAGCACATATGAAGATAGCAACCAAAATCTTGATCTTAACTTGGGCATAGCTACTCCTTCTTTCGCTGATAATCAAACGGAGAACTTATACAATGCGAATGGTTTCGATGTTAAACGTGGCTGGGATGACATGCCTATCGAAGGGAGAGTCACGtTTGAGCTCTCTGCATCAAGACTACCGAAGGCTCAGCCGTCTCATGGCTTCACTGCAGCTTCTGAGCGTCCTTCTCTTTGGAGTGGTATTAATTTCCTTCCCATCTGTAAGGAAAGAGCAAtagagaagaaaatggaagcTGATCTCTTGCCTAATTGGTCATGGAAAATCCAAGGTCCTTATGGCAGCTCAACTCTGATTCCACCCTTCTCTGCCGCAGCATCATCAGGATTCCCTTCAACAATAATACCCTCAGCTGCTGATAGTCAAAATCATTTTCCAGACATGACGATCCTCAAACCTCAATTTTCTTCCCCAATCACCAACTCCAGCACCTTACACCCTTTTTATGGCAGGAGATGA 1485 0.4593 MLDLNLSVASSDSASASADMVLHSIPPLSATQRDSSAGSLNSSVVNADASTNTCDGDSCFFADAFAYYNFGILKKNAVDDGASSEAVDISQAEGGSIRTIQLFPVSSAGYNDLTHELEIGHRFPDSSSTKGWLDFSHKEIGCGGEPELSKLSLLQQRPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGIDADINFNIIDYDDDIKQMSNFSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLYDSEIEAARAYDKAAIKCNGREAVTNFEPSTYEDSNQNLDLNLGIATPSFADNQTENLYNANGFDVKRGWDDMPIEGRVTFELSASRLPKAQPSHGFTAASERPSLWSGINFLPICKERAIEKKMEADLLPNWSWKIQGPYGSSTLIPPFSAAASSGFPSTIIPSAADSQNHFPDMTILKPQFSSPITNSSTLHPFYGRR 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3272 494 CDD AP2 264 324 IPR001471 GO:0003700|GO:0006355
Sto13g3272 494 Gene3D AP2/ERF domain 264 323 IPR036955 GO:0003700|GO:0006355
Sto13g3272 494 Gene3D AP2/ERF domain 172 231 IPR036955 GO:0003700|GO:0006355
Sto13g3272 494 SUPERFAMILY DNA-binding domain 172 229 IPR016177 GO:0003677
Sto13g3272 494 ProSiteProfiles AP2/ERF domain profile. 173 229 IPR001471 GO:0003700|GO:0006355
Sto13g3272 494 Pfam AP2 domain 264 314 IPR001471 GO:0003700|GO:0006355
Sto13g3272 494 Pfam AP2 domain 173 221 IPR001471 GO:0003700|GO:0006355
Sto13g3272 494 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 484 - -
Sto13g3272 494 SMART rav1_2 173 235 IPR001471 GO:0003700|GO:0006355
Sto13g3272 494 SMART rav1_2 265 328 IPR001471 GO:0003700|GO:0006355
Sto13g3272 494 ProSiteProfiles AP2/ERF domain profile. 265 322 IPR001471 GO:0003700|GO:0006355
Sto13g3272 494 SUPERFAMILY DNA-binding domain 264 323 IPR016177 GO:0003677
Sto13g3272 494 PRINTS Ethylene responsive element binding protein signature 266 277 IPR001471 GO:0003700|GO:0006355
Sto13g3272 494 PRINTS Ethylene responsive element binding protein signature 304 324 IPR001471 GO:0003700|GO:0006355
Sto13g3272 494 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 484 - -
Sto13g3272 494 CDD AP2 173 230 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3272 Sto-Chr13 36439740 36442463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3272 160 338 AP2-EREBP Transcription Factor Family AT4G36920 80.729 9.71e-94 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Sto13g3272 AP2 9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3272 K09284 - gmx:100797238 536.184