Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3258 ttggGAGCAAAGAAGAAGCAGGGAAGGCAAGCTTGTTGTCTTCAAACAATGGCCAATGACTCCTCCTTTTTGTTCTCCGGCATTCGCTTTGATAGAAAGAGGTTCGGCGGCGATATTGCTAAGTTCGAGaaaaaagaaagcGATCATGCCTTGAACGTTTCCAGCTTGATTGAAGTTGAGGAAGTAGAACCAGTTGGAGGCAAAGCGTCTGCTAAGAAGAGGAAGCGGAAGGGGACGGTTTCGGAAACCGTTGATGGATTCAATGTCTTTAAAAAGTCAAAATCAGCGGAACGTCCACCAAAAGATGGAGATAAATCTGTAATTGAGCCTGTTCTGAAGAAGGAACAGAATAGGCAGCTTGAGCGGGATGCTCTCTTCAGGAAGAAGCACAACATTCATGTGTCTGGTTACAATGTCCCCTCCCCGCTTCAAAATTTTAACGAGTTGAGCTCAAGATATAAATGTGAAAAATACTTATTACGCAATCTGGTAGAACTTGGATTCAGAGAACCAACTCCTATACAAAGGCAGGCTATTCCTGTACTTCTACATGATCGCGAATGCTTCGCCTGCGCCCCAACTGGTTCTGGGAAAACCTTGGCATTTGTATGTCCAATGCTTATGAAGCTCAAGGATCCCTCAAAAAATGGCGTTCGCGCTGTTGTCCTTTGTCCTACTCGTGAATTATCTTCACAAACATACAGAGAGTGCAAAAAGATggctaaagggaaaaaattccGTATCAAGTTAATGACAAAAGAGCTATCAAGAACTGgtgatttttcaaaatttccATGTGATATACTTATATCCACACCGCTTCGATTACGCCTGGCTATCAAAAGGAAAAAGGTTGACCTTAGCAGAGTCGAGTATCTTGTCCTGGATGAATCTGATAAGCTATTTGAGCTTGGATTGTTCAAGCAGATAGATTCTATCATCAAAGCATGCTCAAATCCCTCAATAATACGCTCACTTTTCAGTGCTACTTTACCTGATTTTGTTGAGGATCGTGCTCGGGAGCTTATGCACGATGCTGTTAGAGTTATTGTTGGCAGGAAGAATATGGCTTCTGAAACAATAAAGCAAAAACTGGTTTTTACTGGGAGTGAAGAGGGAAAACTTATAGCAATTCGCCAAAGCTTTGCAGAGAGTTGGAATCCTCCAGTACTGGTCTTTGTCCAAAGTAAGGAGCGAGCAAAGGAACTCCATGGCGAACTTGCATATGACAACATTAGAGTTGATGCCATCCATTCTGATTTGTCTCAGAAAGAGCGAGAAGATGCTGTTGATAATTTCAGAGCTGGCAAAACATGGGTTTTGATTGCTACTGATGTAGTTGCGCGGGGCATGGATTTCAAAGGTGTGAAGTGTGTGATCAACTATGATTTTCCAGATTCAGCTTCTGCATACATTCATAGAATTGGTCGTTCTGGCAGAGCAGGGAGGGCTGGAGAAGCGATAACTTTTTACTCGGAGGATGACATTCCATTCCTGCGCAATATAGCCAACCTGATGGCAGCATCAGGTTGTGAGGTTCCGTCTTGGCTCATGGAGTTACCCAAAAAGAAGTGGAAGAAACATAGGCCCAAGAGAGATTCAATCTCAACCAAACCGAAAGAATAA 1626 0.4182 LGAKKKQGRQACCLQTMANDSSFLFSGIRFDRKRFGGDIAKFEKKESDHALNVSSLIEVEEVEPVGGKASAKKRKRKGTVSETVDGFNVFKKSKSAERPPKDGDKSVIEPVLKKEQNRQLERDALFRKKHNIHVSGYNVPSPLQNFNELSSRYKCEKYLLRNLVELGFREPTPIQRQAIPVLLHDRECFACAPTGSGKTLAFVCPMLMKLKDPSKNGVRAVVLCPTRELSSQTYRECKKMAKGKKFRIKLMTKELSRTGDFSKFPCDILISTPLRLRLAIKRKKVDLSRVEYLVLDESDKLFELGLFKQIDSIIKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLIAIRQSFAESWNPPVLVFVQSKERAKELHGELAYDNIRVDAIHSDLSQKEREDAVDNFRAGKTWVLIATDVVARGMDFKGVKCVINYDFPDSASAYIHRIGRSGRAGRAGEAITFYSEDDIPFLRNIANLMAASGCEVPSWLMELPKKKWKKHRPKRDSISTKPKE 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3258 541 Gene3D - 123 356 IPR027417 -
Sto13g3258 541 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 360 521 IPR001650 -
Sto13g3258 541 SMART ultradead3 167 364 IPR014001 -
Sto13g3258 541 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 57 22 538 - -
Sto13g3258 541 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 179 349 IPR014001 -
Sto13g3258 541 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 216 502 IPR027417 -
Sto13g3258 541 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 148 176 IPR014014 GO:0003724
Sto13g3258 541 CDD DEADc_DDX52 159 352 IPR044764 GO:0003724|GO:0005524|GO:0030490
Sto13g3258 541 CDD SF2_C_DEAD 361 491 - -
Sto13g3258 541 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 22 538 - -
Sto13g3258 541 Gene3D - 357 538 IPR027417 -
Sto13g3258 541 SMART helicmild6 401 482 IPR001650 -
Sto13g3258 541 Pfam DEAD/DEAH box helicase 172 336 IPR011545 GO:0003676|GO:0005524
Sto13g3258 541 Pfam Helicase conserved C-terminal domain 387 482 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3258 Sto-Chr13 36353551 36357223 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3258 142 520 Eukaryotic Initiation Factors Gene Family AT3G19760 32.808 4.94e-60 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3258 K14779 - gmx:100800969 828.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3258 13 36353551 36357223 Sto13g3258 13 36353551 36357223 ECH