Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3248 ATGCAGATCTTTGTCAAAACCCTAACGGGAAAGACAATCACCCTTGAGGTGGAGAGCTCAGACACCATTGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGTATTCCCCCCGACCAGCAGAGGCTCATCTTCGCCGGAAAGCAGTTGGAGGATGGCCGTACCCTTGCTGATTACAATATCCAGAAGGAATCGACTCTTCACCTCGTTCTTCGATTGAGGGGTGGTATGCAGATCTTCGTTAAAACCCTAACGGGAAAGACAATCACCCTTGAGGTAGAGAGCTCCGACACAATTGACAATGTTAAAGCCAAGATCCAGGACAAGGAAGGTATTCCCCCAGACCAGCAGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGCCGTACCCTTGCTGATTACAATATCCAGAAGGAATCGACTCTTCACCTTGTTCTTCGATTGAGGGGTGGTATGCAGATCTTCGTTAAAACCCTAACGGGAAAGACAATCACCCTTGAGGTAGAGAGCTCCGACACAATCGACAATGTTAAAGCCAAGATCCAGGACAAGGAAGGTATTCCCCCAGACCAGCAGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGCCGCACCCTGGCCGATTACAATATCCAGAAGGAGTCCACCCTTCACCTTGTTCTTCGATTGAGAGGTGGTATGCAGATTTTTGTCAAAACCTTAACGGGGAAGACTATTACCTTGGAGGTTGAAAGTTCTGACACTATTGACAACGTGAAGGCCAAGATTCAGGATAAGGAAGGTATTCCCCCTGATCAACAGAGACTTATTTTTGCTGGTAAACAATTGGAAGACGGTCGTACCCTTGCGGATTACAACATCCAGAAGGAATCCACCCTTCACCTTGTGCTTCGGCTTCGTGGAGGAATGCAGATTTTTGTCAAGACTCTTACTGGCAAAACCATCACTCTGGAAGTTGAGAGTTCCGATACCATCGACAATGTCAAGGCTAAGATTCAAGATAAGGAAGGTATTCCACCCGACCAGCAGCGACTGATCTTTGCTGGTAAGCAATTGGAGGATGGGAGGACCCTTGCGGATTATAACATCCAGAAAGAGTCCACCTTGCATTTGGTTCTTCGTCTGCGTGGAGGGATGCAGATTTTTGTTAAGACGCTTACCGGGAAAACAATCACTTTGGAGGTTGAGAGCTCGGATACAATTGATAATGTGAAGGCCAAAATTCAGGACAAGGAGGGTATCCCACCAGACCAACAGCGTCTCATATTCGCCGGGAAACAGCTTGAAGATGGACGCACGCTTGCTGATTATAACATTCAGAAGGAATCCACCCTTCATCTTGTCCTCCGTCTCCGCGGTGGGGAGATCTGA 1377 0.4844 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGEI 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3248 458 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Sto13g3248 458 SUPERFAMILY Ubiquitin-like 152 228 IPR029071 -
Sto13g3248 458 Gene3D - 1 76 - -
Sto13g3248 458 Gene3D - 77 152 - -
Sto13g3248 458 Gene3D - 382 458 - -
Sto13g3248 458 Gene3D - 153 228 - -
Sto13g3248 458 Gene3D - 229 304 - -
Sto13g3248 458 Gene3D - 305 381 - -
Sto13g3248 458 SUPERFAMILY Ubiquitin-like 304 380 IPR029071 -
Sto13g3248 458 CDD Ubl_ubiquitin 77 152 - -
Sto13g3248 458 ProSiteProfiles Ubiquitin domain profile. 381 456 IPR000626 GO:0005515
Sto13g3248 458 PANTHER UBIQUITIN 13 76 283 - -
Sto13g3248 458 PANTHER UBIQUITIN 13 1 207 - -
Sto13g3248 458 PANTHER UBIQUITIN 13 362 456 - -
Sto13g3248 458 PANTHER UBIQUITIN 13 152 359 - -
Sto13g3248 458 PANTHER UBIQUITIN 13 204 434 - -
Sto13g3248 458 ProSiteProfiles Ubiquitin domain profile. 153 228 IPR000626 GO:0005515
Sto13g3248 458 CDD Ubl_ubiquitin 229 304 - -
Sto13g3248 458 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Sto13g3248 458 ProSitePatterns Ubiquitin domain signature. 255 280 IPR019954 -
Sto13g3248 458 ProSiteProfiles Ubiquitin domain profile. 305 380 IPR000626 GO:0005515
Sto13g3248 458 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Sto13g3248 458 ProSiteProfiles Ubiquitin domain profile. 229 304 IPR000626 GO:0005515
Sto13g3248 458 SUPERFAMILY Ubiquitin-like 228 304 IPR029071 -
Sto13g3248 458 CDD Ubl_ubiquitin 381 456 - -
Sto13g3248 458 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Sto13g3248 458 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Sto13g3248 458 PRINTS Ubiquitin signature 11 31 IPR019956 -
Sto13g3248 458 PRINTS Ubiquitin signature 32 52 IPR019956 -
Sto13g3248 458 PRINTS Ubiquitin signature 53 74 IPR019956 -
Sto13g3248 458 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Sto13g3248 458 ProSitePatterns Ubiquitin domain signature. 407 432 IPR019954 -
Sto13g3248 458 SUPERFAMILY Ubiquitin-like 380 456 IPR029071 -
Sto13g3248 458 CDD Ubl_ubiquitin 1 76 - -
Sto13g3248 458 CDD Ubl_ubiquitin 153 228 - -
Sto13g3248 458 PANTHER UBIQUITIN 362 456 - -
Sto13g3248 458 PANTHER UBIQUITIN 1 207 - -
Sto13g3248 458 PANTHER UBIQUITIN 152 359 - -
Sto13g3248 458 PANTHER UBIQUITIN 76 283 - -
Sto13g3248 458 PANTHER UBIQUITIN 204 434 - -
Sto13g3248 458 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Sto13g3248 458 Pfam Ubiquitin family 383 454 IPR000626 GO:0005515
Sto13g3248 458 Pfam Ubiquitin family 307 378 IPR000626 GO:0005515
Sto13g3248 458 Pfam Ubiquitin family 155 226 IPR000626 GO:0005515
Sto13g3248 458 Pfam Ubiquitin family 231 302 IPR000626 GO:0005515
Sto13g3248 458 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Sto13g3248 458 ProSitePatterns Ubiquitin domain signature. 331 356 IPR019954 -
Sto13g3248 458 SMART ubq_7 153 224 IPR000626 GO:0005515
Sto13g3248 458 SMART ubq_7 1 72 IPR000626 GO:0005515
Sto13g3248 458 SMART ubq_7 305 376 IPR000626 GO:0005515
Sto13g3248 458 SMART ubq_7 381 452 IPR000626 GO:0005515
Sto13g3248 458 SMART ubq_7 229 300 IPR000626 GO:0005515
Sto13g3248 458 SMART ubq_7 77 148 IPR000626 GO:0005515
Sto13g3248 458 ProSitePatterns Ubiquitin domain signature. 179 204 IPR019954 -
Sto13g3248 458 CDD Ubl_ubiquitin 305 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3248 Sto-Chr13 36303647 36305023 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3248 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 5.68e-47 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3248 - K08770 vvi:100259635 882.478