Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3247 ATGGGTCACAGACATTTGTATAGCACATCTCAAATGTTTGAGAATGAGCATGAACAGAATTGGAATCCTATGCATACCGATCAACATTATGTGCAACTTGGTAGAAATAGCACTTTAGAGAACGGTTCTTTCATTTATCCTGTGGAAAATATGCCTATAGATGGCATTTCTTTTGCCTCTAATTGGAACCCTACAACAAGGTCAAATGGATTTGCATCCTCAAGTCTGAATATCGAAGTACCCTCTCATCAATCAGATGCATCAGGCACTTCTCATGATCATTTTCTACATTCATCAAGTTCTGGAGCCTTCTTTGCAGTTTCTGAAAATTATGCTCACCAGCCTTCTTCTTCCAATTACGATAGACAGGCATTTCATGTCGTTGATGGTGGTTTTGTTGATCTTACAATGGGAAATGGAAGAGGGCCTCACAAGCGTAAGAGCCCTGGAATTCCTCCAGTCTGTGAGAGAGGCAATACAAGCAGATACTTCAATGCTGGAAGTTCAGCTGATCTTCCTATATCTTCAGAATTACGGCAGAAGCCAAGTATGGATTCTCAATATTTGCCTTGGGATCAAGTTGCTATGCCGCCCACCTTCAGAGGTAGTGGCCTTTCAATCAGGGGCGAGGGTTCCTTAAGAAATGTGAGAAGCCGTTCTGCACTTGATCTTGAATCCAACTTGGCTAGGTCCCATTTACCAAGCAATCCTCCACATAACTACTCTACTGGTCCACCCATTGACCATTCTAGCACAGTGGATCTGCCAGGTCAAAGTTCTAGCACATTGACGAGGGATTGGAGCCAAATGAGCGGATCTCCCGCTCATGGTGGGGTGTTATTACCAGATATTAGTGCTCTTAGTCGTGAAACAAGCCACTGCCTTGTTGGAAGTAGTGCTAGTAATGCCTCTGTAGATGTTGGGGGTTACCATCATGAATATGGCACAAGCGGAAACCCTGTTGTTCCTCAAAGTTTTCATAATAATCTGACTCACACTGCTAGGGGAGTTCGCAGTAACTTTCAACAAAGATCTACTCCACCTTTTAGGACTTCATCTGGCTTGCGTTTAGGACATGTGGCACCTTCAGATGATGGATTGCAAATGGTTGCTGAAAGTTACTCCTCAAGACATCCAAGACCATTAACAACCATGGGCTGGCGGAACAGTGACAGAAATGGGAGGTCAAGGGTATCTAGTGATAGATATCGAGCATTGGCTGATGCAGCTGGTCTTCATGATCGCTTCTCCTCAGAGGTATGTTTTGTATCGTTCAAGATCGTGTTTCTGGCTATACTACTCGTGGCAGTTTCAAACTTGTTACTATTTTCCTTGCAGGGGTTCATGATTGTTGATCGCTCATTACCATATGGTTCTAGACCTATGGTTGATCAGCATAGAGACATGAGGATGGACATAGACAACTTGAGCTATGAGGAACTACTTGCACTTGGAGAGAGGATTGGCCATGTCAGCACAGGATTGTCTGAGGATTTGATTTCAAAATGTTTGACGGAAACAATATATTGTTCTTCTGAACAAAGTCAGGAGGAAGGAACTTGCGTAATCTGTTTGGAAGAGTACAAGAATATGGATGATGTTGGGACGCTGAAAACTTGCCGTCACGACTACCATGTGAGCTGCATTAGAAAGTGGTTATCTATGAAGAACCAATGTCCCATTTGCAAAGCTCCTGCTCTGCCTGATGATACGAaggataaataa 1725 0.4325 MGHRHLYSTSQMFENEHEQNWNPMHTDQHYVQLGRNSTLENGSFIYPVENMPIDGISFASNWNPTTRSNGFASSSLNIEVPSHQSDASGTSHDHFLHSSSSGAFFAVSENYAHQPSSSNYDRQAFHVVDGGFVDLTMGNGRGPHKRKSPGIPPVCERGNTSRYFNAGSSADLPISSELRQKPSMDSQYLPWDQVAMPPTFRGSGLSIRGEGSLRNVRSRSALDLESNLARSHLPSNPPHNYSTGPPIDHSSTVDLPGQSSSTLTRDWSQMSGSPAHGGVLLPDISALSRETSHCLVGSSASNASVDVGGYHHEYGTSGNPVVPQSFHNNLTHTARGVRSNFQQRSTPPFRTSSGLRLGHVAPSDDGLQMVAESYSSRHPRPLTTMGWRNSDRNGRSRVSSDRYRALADAAGLHDRFSSEVCFVSFKIVFLAILLVAVSNLLLFSLQGFMIVDRSLPYGSRPMVDQHRDMRMDIDNLSYEELLALGERIGHVSTGLSEDLISKCLTETIYCSSEQSQEEGTCVICLEEYKNMDDVGTLKTCRHDYHVSCIRKWLSMKNQCPICKAPALPDDTKDK 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3247 574 MobiDBLite consensus disorder prediction 229 266 - -
Sto13g3247 574 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 570 - -
Sto13g3247 574 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 570 IPR045191 GO:0061630
Sto13g3247 574 SUPERFAMILY RING/U-box 510 568 - -
Sto13g3247 574 ProSiteProfiles Zinc finger RING-type profile. 521 563 IPR001841 -
Sto13g3247 574 Pfam Ring finger domain 520 563 IPR001841 -
Sto13g3247 574 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 486 567 IPR013083 -
Sto13g3247 574 SMART ring_2 521 562 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3247 Sto-Chr13 36295122 36297634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3247 1 573 C3H Transcription Factor Family AT2G37150 40.545 2.72e-114 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3247 - - gmx:100803627 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3247 13 36295122 36297634 Sto13g3247 13 36295122 36297634 ECH