Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g3243 CTGGATGCGGTAGCGTGGAGAGGATTGTTCTACTCAATCTTCATTCTCAATTTTGTTTTGGTTTGCCAGCTCATTCTTCTTCAACCTCTGGTTTCTGCTTTAGAGGGAAAATCTGGAAATGCTGCTGAGTTATTTGAGAGGGTGTCACAAAGTATAAAGGTGAAACAATATACTGAGGCACTTGATGATCTCAATGCTGCCATTGAAGCAGATCCAACCCTTTCAGAAGCATACCTTCGGCGTGCATCACTTCTTCGTCAGATATGCAGATATGAGGAATCTGAGAGGAGCTACAGAAAGTTTCTGGAGTTGAAACCTGGAAATTCAGCAGCAGAAAAGGAGCTCTCTCAGTTGTTGCAGGCTCAAAGTGCTCTCGAAACGGCTCAGTCACTCTTTGATTCGGGCAACTTTACAAAATCTTTGGAATACATTGATAAAATTGTACTCGTTTTTTCTCCAGCTTGCTCAAAGGCTAAGCTTCTGAAAGTAAGATTGTTGATAGCTGATAGAGAGTATGAGGGTGCCATTGCAGAGTCTGGATTTATTCTTAAAGAAGATGAGAATAATTTACAGGCCTTGTTGCTCCGTGGGCGAGCATACTACTATTTGGCTGATCATGATGTTGCCATGAGGCATTTCCAGAAAGGTCTTCGCCTAGATCCAGAGCACAGTGAACTGAAAAAAGCATATTTTGGATTAAAAAATCTTCTGAAAAAGAGTAAAAGTGCTGAAGATAATGCAAGTAAGGGTAAACTCCGTGTGTCAGTAGAGGATTTCAAAGCTGCACTGGCACTTGATCCTAATCATCTTGCACATAATGTCCATCTTCATCTTGGCTTATGTAAAGTACTGGTCAAGCTTGGCAGGGGAAAAGATGCTTTGAACAGTTGTGATGAAGCTCTTAAGATCAATGAGGAACTTATTGAAGCTCTTGTTCAGAGAGGAGAAGCCAAACTTTTAATAGAGGATTGGGAGGGAGCTGTGCAAGATCTGAAATCAGCTGCTCAAAAATCTCCTCAGGATATGAATATTCGTGAAGCATTAATGAGGGCGGAGAAAGCTTTAAAGATGAGCAAGCGCAAGGACTATTACAAGATTTTGGGAATTTCAAAAACAGCTTCAGCCTCTGACATAAAGCGTGCCTACAAGAAGCTTGCTTTGCAATGGCACCCAGATAAGAATGTCGACAATAGGGAAGAAGCAGAGGCTAAATTCCGAGAAATTGCTGCTGCATATGAGGTTCTCAGTGACGAAGACAAACGAACTAGATATGACAGAGGGGAAGACCTTGAAGACATGGGAATGGGTGGGGGAGGTGGTGGGTTCAACCCCTTTGGCGGTGGGGGCCAACAGTTTACCTTTACTTTTGATGGAGGCTTCCCTGGTGGTGGCTTTCCAGGTGGATTTGGAGGAGGCTTTCCTGGCGGTGGCGGCGGCGGCTTTGAGTTCCATTTTTGA 1458 0.4355 LDAVAWRGLFYSIFILNFVLVCQLILLQPLVSALEGKSGNAAELFERVSQSIKVKQYTEALDDLNAAIEADPTLSEAYLRRASLLRQICRYEESERSYRKFLELKPGNSAAEKELSQLLQAQSALETAQSLFDSGNFTKSLEYIDKIVLVFSPACSKAKLLKVRLLIADREYEGAIAESGFILKEDENNLQALLLRGRAYYYLADHDVAMRHFQKGLRLDPEHSELKKAYFGLKNLLKKSKSAEDNASKGKLRVSVEDFKAALALDPNHLAHNVHLHLGLCKVLVKLGRGKDALNSCDEALKINEELIEALVQRGEAKLLIEDWEGAVQDLKSAAQKSPQDMNIREALMRAEKALKMSKRKDYYKILGISKTASASDIKRAYKKLALQWHPDKNVDNREEAEAKFREIAAAYEVLSDEDKRTRYDRGEDLEDMGMGGGGGGFNPFGGGGQQFTFTFDGGFPGGGFPGGFGGGFPGGGGGGFEFHF 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g3243 485 Gene3D Tetratricopeptide repeat domain 28 359 IPR011990 GO:0005515
Sto13g3243 485 CDD DnaJ 362 417 IPR001623 -
Sto13g3243 485 ProSiteProfiles dnaJ domain profile. 362 428 IPR001623 -
Sto13g3243 485 SUPERFAMILY Chaperone J-domain 355 464 IPR036869 -
Sto13g3243 485 Pfam Tetratricopeptide repeat 54 109 - -
Sto13g3243 485 SUPERFAMILY TPR-like 52 357 IPR011990 GO:0005515
Sto13g3243 485 ProSitePatterns Nt-dnaJ domain signature. 405 424 IPR018253 -
Sto13g3243 485 Coils Coil 398 418 - -
Sto13g3243 485 Gene3D DnaJ domain 360 468 IPR036869 -
Sto13g3243 485 PRINTS DnaJ domain signature 382 397 IPR001623 -
Sto13g3243 485 PRINTS DnaJ domain signature 364 382 IPR001623 -
Sto13g3243 485 PRINTS DnaJ domain signature 420 439 IPR001623 -
Sto13g3243 485 PRINTS DnaJ domain signature 400 420 IPR001623 -
Sto13g3243 485 SMART tpr_5 308 341 IPR019734 GO:0005515
Sto13g3243 485 SMART tpr_5 190 223 IPR019734 GO:0005515
Sto13g3243 485 SMART tpr_5 274 307 IPR019734 GO:0005515
Sto13g3243 485 SMART tpr_5 41 74 IPR019734 GO:0005515
Sto13g3243 485 SMART tpr_5 75 108 IPR019734 GO:0005515
Sto13g3243 485 ProSiteProfiles TPR repeat profile. 75 108 IPR019734 GO:0005515
Sto13g3243 485 SMART dnaj_3 361 420 IPR001623 -
Sto13g3243 485 Pfam DnaJ domain 362 425 IPR001623 -
Sto13g3243 485 Pfam Tetratricopeptide repeat 192 223 IPR013105 -
Sto13g3243 485 Coils Coil 108 128 - -
Sto13g3243 485 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 2 470 IPR044620 -
Sto13g3243 485 ProSiteProfiles TPR repeat profile. 190 223 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g3243 Sto-Chr13 36261475 36266804 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g3243 358 425 C2H2 Transcription Factor Family AT1G74250 45.833 5.99e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g3243 K09523 - gmx:100804685 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3243 13 36261475 36266804 Sto13g3243 13 36261475 36266804 ECH